PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g002250.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 350aa    MW: 39243.8 Da    PI: 4.6001
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g002250.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18106156155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGVr++k +g+W+AeIrd +     + +r++lg++ ta eA +a++  r+++e 
  Sopen04g002250.1 106 SKYKGVRQRK-WGKWAAEIRDpF-----KgRRVWLGTYNTAVEASRAYELKRLEFET 156
                       89*******9.**********55.....45***********************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.41E-17106155IPR016177DNA-binding domain
PfamPF008472.9E-12106156IPR001471AP2/ERF domain
CDDcd000184.91E-24106164No hitNo description
SMARTSM003803.6E-19107169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-21107156IPR001471AP2/ERF domain
PROSITE profilePS5103220.178107166IPR001471AP2/ERF domain
PRINTSPR003674.9E-9108119IPR001471AP2/ERF domain
PRINTSPR003674.9E-9130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MLKPLSSKFE NLGRNMKKKV DTNRLVRKIR IVCNDPDATD DSSDDDSRCK RFVREIKLQI  60
GNSFNLRKAS EIECSFQDSN NGEKKTKKEG FVKPLIQPRP AGGLLSKYKG VRQRKWGKWA  120
AEIRDPFKGR RVWLGTYNTA VEASRAYELK RLEFETRAKI SRTNVSKESS GSMVSEYQNQ  180
SQNVASGVSE DYAESSVSRT SHSLSSSSVL ELDTLTSVSA SAPILRLNGL NDNEKASNVA  240
PLEANVVEQE VPELAMMEET LPLSQIGESM DLDLELESFL IGADDFNQHL DEFVVNDFED  300
PPVYLIEGDE QLPTGLPDFD DFNFDGYNES FSWMDDAPRT NGTPLNIACP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1299160668Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071454.10.0ethylene-responsive transcription factor ERF119-like
TrEMBLA0A3Q7FYU30.0A0A3Q7FYU3_SOLLC; Uncharacterized protein
STRINGSolyc04g007180.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-24ERF family protein