PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g002090.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family RAV
Protein Properties Length: 370aa    MW: 41969.6 Da    PI: 9.6203
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g002090.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2431.2e-1365113155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  Sopen04g002090.1  65 SKFKGVVPQP-NGRWGAQIYEK-----HQRIWLGTFNGEEEAARAYDIAAQRFRG 113
                       79****9888.8*********3.....5*************************98 PP
2B392.33.6e-29200293185
                       EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f+k+ tpsdv+k++rlv+pk++ae++         + ++ +++ l +ed +g+ W+++++y+++s++yvltkGW+++vk+++Lk+gD+v Fk+
  Sopen04g002090.1 200 FEKAVTPSDVGKLNRLVIPKQHAERYfplvakvnkNDNTSKGVLLNFEDMNGKMWRFRYSYWNSSQSYVLTKGWSRYVKEKKLKAGDIVSFKR 292
                       89*****************************9999778889***************************************************4 PP

                       - CS
                B3  85 d 85 
                        
  Sopen04g002090.1 293 C 293
                       3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-865113IPR001471AP2/ERF domain
CDDcd000186.32E-2765120No hitNo description
SuperFamilySSF541712.75E-1765121IPR016177DNA-binding domain
PROSITE profilePS5103219.82366121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-2066121IPR001471AP2/ERF domain
SMARTSM003809.1E-2766127IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.4E-38192306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-29198293IPR015300DNA-binding pseudobarrel domain
CDDcd100179.40E-26199292No hitNo description
PROSITE profilePS5086313.733200309IPR003340B3 DNA binding domain
PfamPF023621.8E-26200293IPR003340B3 DNA binding domain
SMARTSM010192.1E-18200302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEVSCIDQEI SITSDSPSTI SPAGSPRQMG SGVSVIIDAD STNGVEAESK NTTITNNNNN  60
KLPSSKFKGV VPQPNGRWGA QIYEKHQRIW LGTFNGEEEA ARAYDIAAQR FRGRDAVTNF  120
IDFQTEEIEI SFLNSRSKVE IVDMLRKHTY NDELQHAKKV YNNNTFEMNG RRTCYTNNNI  180
ATFSLDANEK VANKASELLF EKAVTPSDVG KLNRLVIPKQ HAERYFPLVA KVNKNDNTSK  240
GVLLNFEDMN GKMWRFRYSY WNSSQSYVLT KGWSRYVKEK KLKAGDIVSF KRCSGVGIED  300
KQLFIDSTNR IIRGEQVKVV RLFGVNICKV QDVSNNVVVE KNMSVGKRMR EMELLAFECS  360
KKQRVIIDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-501973105113B3 domain-containing transcription factor NGA1
5os9_B1e-501973105113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072116.20.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-130RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLE1U2K40.0E1U2K4_SOLLC; RAV1
STRINGSolyc04g007000.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-130related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]