PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g002040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 371aa MW: 42384.6 Da PI: 8.576 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 152.4 | 2.8e-47 | 105 | 247 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....sec...eaesssssasnsss 87 +gkkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL+ +++ aik+l +++ +++ ++ +++sss +++++s Sopen04g002040.1 105 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFSKSNNAIKDLSENTPQKEysdgNKIvinSNNSSSYEGKSDSF 197 79**************************************************************33333333323345555555555555555 PP TCP 88 gkaaksaa.kskksqksaasalnlak.esrakarararertrekmriknk 135 ++++++ ++ ++k++ ++n++k esr+karararert+ekm+ik + Sopen04g002040.1 198 MSECEENSiNELGKDKEKIMQNNPHKrESREKARARARERTKEKMMIKGN 247 588888876666666666666788889*******************9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-44 | 105 | 243 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.882 | 107 | 165 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.105 | 224 | 241 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MFPSSNNHDT FSYTSKTFLE RSFTYDHQNP SSSSRQEDNP FFLNFPSPFL DHNESPLSQI 60 LPQDHHVKEG NFTHLSSETS KEEMSIEAKP SSKKRSLSTT PRRRTGKKDR HSKICTAQGV 120 RDRRVRLSLH IARKFFDLQD MLGFDKASKT IEWLFSKSNN AIKDLSENTP QKEYSDGNKI 180 VINSNNSSSY EGKSDSFMSE CEENSINELG KDKEKIMQNN PHKRESREKA RARARERTKE 240 KMMIKGNPSN MFDQLGSSRS NSGFLDQDSN NNSYNTSVNQ EKGSPHEANS QSLEHHFPIQ 300 NYLGGASNSS TIDVGNCFLS FHGNWEINYA PMKSTNYSTT FAGNPSSIYL AQQYQTLDQE 360 KNLSCKHHRL E |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015071933.1 | 0.0 | transcription factor TCP12 | ||||
TrEMBL | G3BGW4 | 0.0 | G3BGW4_SOLLC; TCP transcription factor 22 | ||||
STRING | Solyc04g006980.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2436 | 23 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 3e-31 | TCP domain protein 12 |