PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g001860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 257aa MW: 30160.6 Da PI: 6.1868 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.1 | 1.3e-17 | 41 | 94 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q+e Le+ Fe ++++ e++ +LAk++gL+ rqV +WFqNrRa+ k Sopen04g001860.1 41 KKRRLLPKQVEYLEKSFEVENKLEPERKVQLAKETGLQPRQVAIWFQNRRARCK 94 45577899********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 121.1 | 5.7e-39 | 40 | 131 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl +qv+ LE+sFe e+kLeperKv+la+e glqprqva+WFqnrRAR ktkqlEkdy++Lk+++d+lk++ + L ke+ +Lr+e++ Sopen04g001860.1 40 EKKRRLLPKQVEYLEKSFEVENKLEPERKVQLAKETGLQPRQVAIWFQNRRARCKTKQLEKDYDVLKASFDKLKTQYDCLFKENGSLRNEVH 131 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.07E-18 | 25 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.649 | 36 | 96 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-18 | 39 | 100 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.6E-15 | 41 | 94 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.69E-15 | 41 | 97 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 44 | 103 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.9E-5 | 67 | 76 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 71 | 94 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.9E-5 | 76 | 92 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.0E-18 | 96 | 137 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MVNFDQDRVQ KSKKRSFLAQ LDQDDSSSND DNYNYHHQSE KKRRLLPKQV EYLEKSFEVE 60 NKLEPERKVQ LAKETGLQPR QVAIWFQNRR ARCKTKQLEK DYDVLKASFD KLKTQYDCLF 120 KENGSLRNEV HLLKEKLINR VKGKEILEFI SPLDHVEPQN PSIGVDSSLA MVKCKQEDAK 180 SDVLDSDSPR FTDGDYTSYL KPADSSNVFQ TEHSDFSREN DTLCFPKLEE HHHHDDLPVN 240 SCNLGFQIED QSWFSHY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 96 | RRARCKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001340424.1 | 0.0 | homeobox-leucine zipper protein HZ24 | ||||
TrEMBL | A0A3Q7FVA8 | 0.0 | A0A3Q7FVA8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g005800.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-42 | homeobox 1 |