PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g001260.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 329aa    MW: 36915.7 Da    PI: 5.8166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g001260.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.31.8e-154594255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      r +h+  E+rRR++iN++f+ Lr+l+P+     ++K + a+ L ++++Y+++Lq
  Sopen04g001260.1 45 RSKHSVTEQRRRSKINERFQILRDLIPHT----DQKRDTASFLLEVIQYVQYLQ 94
                      899*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1841115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-2142115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.8284393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.78E-144598No hitNo description
PfamPF000107.9E-134594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-114999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKAVKGHQEE EEEEEDETGI IKKDATPSSS NTKDGKSNEK ASALRSKHSV TEQRRRSKIN  60
ERFQILRDLI PHTDQKRDTA SFLLEVIQYV QYLQEKVQKY EGPYQPWSSE PTKLMPWRNS  120
HWRMQSLPAQ PHALKNGSGP ESTYLGRFDE NLATVTSTMQ PNQQNPIESH TSRDVSFKAL  180
DQQNELANKS ITTPIPLQAS MTMPVPNNSA FSEPQPRPVS DQCPNTIDAL NHDEDDVIDG  240
GRISLSNSYS QGFLTSLSQA LQSTGLDLSK ATISVQIDFG KRANQAMTSG PSIAKDDENP  300
TLSGHQHTDH FREASNDEDM NQAQKRLKI
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071536.10.0transcription factor BIM2-like isoform X2
SwissprotQ9CAA43e-96BIM2_ARATH; Transcription factor BIM2
TrEMBLM0ZP140.0M0ZP14_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000048320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-95BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]