PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g001200.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 481aa    MW: 52690 Da    PI: 4.9573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g001200.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09301349355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopen04g001200.1 301 NSHSLAERLRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 349
                       58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.67E-11296353No hitNo description
SuperFamilySSF474593.53E-17296367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.504298348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-17299366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-6301349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-10304354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDIVSMDDAE PENVFSDWQF SGSNLINASN RIIDSFCVSV WDNPISSSNL GLCGTNIPMN  60
PGAAIVLDPP GAGVSRMVAM DWTQSNAMSK GGTFSMVPQS LTQLTADSGF IERVTRFSCF  120
SGEKVGDMMN PFAIPNSSNT YHNGLIFGES QDVFDSPSTA ISQKKQMRNA VESSDQDVSL  180
PLEYEHTDRS PLKIDKNVNF VKSQDEAKEC VGISENESEC SGHQEEVEGG YSSARCLGSR  240
KRKRSGQDAE FDQMNGAQQQ PAELAKEQNL NSIACRPGGK NEDPPKEGYI HIRARRGQAT  300
NSHSLAERLR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA  360
TINQRLDFNI DALLAKDILH SRAGPSSSLD FAPDLIVPYQ SSHQLQPGLV HSGLPGSGNS  420
IDTFLKSIYP FLAVTSGGYK ERSSQLPNDE LHNVVEMGLC TSAPLHIREG SLPSGQMKEE  480
P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772507.10.0transcription factor bHLH49-like
TrEMBLM0ZP130.0M0ZP13_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000048300.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-84bHLH family protein