PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g041210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 557aa MW: 62100.7 Da PI: 5.4977 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.1 | 1.6e-16 | 241 | 300 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++t+e+Aa+a++ a++k++g Sopen03g041210.1 241 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDTEEKAARAYDLAALKYWG 300 78*******************655454478446*************************98 PP | |||||||
2 | AP2 | 45.2 | 2.2e-14 | 345 | 394 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Sopen03g041210.1 345 FRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 394 8***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.0E-13 | 241 | 300 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.95E-16 | 241 | 308 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.26E-21 | 241 | 308 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.1E-15 | 242 | 308 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 242 | 308 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-28 | 242 | 314 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 243 | 254 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.28E-25 | 343 | 404 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-17 | 343 | 404 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.716 | 344 | 402 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-18 | 344 | 402 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-34 | 344 | 408 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-9 | 345 | 394 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 384 | 404 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MSNWLGFSLT PDFRIDDDDE EEEVKNYERR NEAAENTPLS VMPLSTNGSL CMMDPFPRCE 60 PTEDCWRYEN HEMSTANNPE EEEGPKLEDF LGCCYSNSPS NEEQQISEIN VNIPPSINQS 120 DHEQHQLEIG ANMKLIPSPQ MIIQNSQFQS SYHEFAHSTS SVYHLPFDGA TSVSGFKSWL 180 RQASVAAPLM SSAEEIVNPT NCQALSLAAA PKKRPVAVKN VGGSKESVPR KSIDTFGQRT 240 SQYRGVTRHR WTGRYEAHLW DNSCRKEGQT RKGRQVYLGG YDTEEKAARA YDLAALKYWG 300 PNTHINSPLN TYEKELEEMK NMNRQEFVAH LRRKSSGFSR GASMFRGVTR HHQHGRWQAR 360 IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN FDISRYDVKR ICSSSTLITG 420 ELAKRSPSKD SVVCPSSYED YSSCTTSPQP ILAITNGEQL QQPIDSFMDM VPMMGAAGSS 480 SRSSSNAPSP KCSGSGEMSC EFGVGLEYPQ AYYSSVQVQD HKFEDGSKGN DDNSSSSGQI 540 GNMDLVHPVP MFALWNQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068407.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 isoform X1 | ||||
Swissprot | Q1PFE1 | 1e-139 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A1W5YR73 | 0.0 | A0A1W5YR73_SOLLC; LIA | ||||
STRING | Solyc03g123430.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8777 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-131 | AP2 family protein |
Publications ? help Back to Top | |||
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