PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g040810.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 606aa    MW: 67375.7 Da    PI: 6.0047
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g040810.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-08489537348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       +WT  E  +lv++v+++G g W+ I r        Rt  ++k++w+++l
  Sopen03g040810.1 489 PWTINEVVKLVEGVARYGAGKWSEIKRLAFstcPYRTSVDLKDKWRNLL 537
                       8***************************999999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.068482541IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-13483540IPR009057Homeodomain-like
SuperFamilySSF466893.14E-16484542IPR009057Homeodomain-like
SMARTSM007171.4E-6486539IPR001005SANT/Myb domain
CDDcd116603.17E-18488538No hitNo description
PfamPF002496.0E-6489537IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MEASEPKFED SAVPVTSTIR ALEKEIAHPI VYQLVRVDGD GRLVPATQDE IMVVEDLLED  60
DKCESKLVPD TRQISESCIT EGYLLERNSF QVTEEKSNVL VDPVPDLGKI DAPDKVAVHG  120
LAPLSELSNV DHSVRNDVCS HSQDAPNEDT PSTSAAGSSW KPDFSKLEGK ICLDDLPVKE  180
LQETFKATFG RETSVKDKQW LKRRITMGLT NSCDFSCTTF IIRDNVVVKK GEEQICHRVK  240
SRISADSEDG VANSNSRGSL SNHDNKINDD ADLSGADVSS SALESCNVTK DLNSEQITAK  300
RARKPTKRYI EELSEIESRE ISEKLASPEK ISRYQFACPE THIRPTKNVR SYVRPLVTRQ  360
DSLGGSGVQI PFVSRIRRSR PRENFMPLLK LQPSGMDMAT RQVRSAFDIS GPQEDDKRNN  420
DLIKTSSSTG WTEQPLIAAC EKDEHYGGMK IVELENDVEV NDCSEDNSDD NVVTVPTQKG  480
GMRRKHHRPW TINEVVKLVE GVARYGAGKW SEIKRLAFST CPYRTSVDLK DKWRNLLKAS  540
FVQLPAEKGI LNSRKQASVP IPAPILSRVR ELADMQGQIP PVLSACKSSG HSSSDRSVHE  600
ARSGFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069816.10.0uncharacterized protein LOC107014425 isoform X2
TrEMBLM0ZR630.0M0ZR63_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063420.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-104TRF-like 6