PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g040550.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 365aa    MW: 41251.4 Da    PI: 7.0177
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g040550.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg W++eEde+l+++++ +G  +W+++++  g+ R++k+c++rw +yl
  Sopen03g040550.1 14 RGLWSPEEDEKLINYITTYGHACWSSVPKLAGLQRCGKSCRLRWINYL 61
                      788*******************************************97 PP
2Myb_DNA-binding44.14.7e-1467109145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       rg+++++E  l+++++  lG++ W+ Ia+ ++ gRt++++k++w+
  Sopen03g040550.1  67 RGSFSPQEAALIIELHGILGNR-WAQIAKNLP-GRTDNEVKNFWN 109
                       899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.223961IPR017930Myb domain
SuperFamilySSF466899.73E-2811108IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002497.9E-151461IPR001005SANT/Myb domain
CDDcd001674.34E-111761No hitNo description
PROSITE profilePS5129424.26762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-2465116IPR009057Homeodomain-like
SMARTSM007172.1E-1466114IPR001005SANT/Myb domain
PfamPF002497.2E-1367110IPR001005SANT/Myb domain
CDDcd001672.96E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGHHTCCNKQ KVKRGLWSPE EDEKLINYIT TYGHACWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHGILGNRWA QIAKNLPGRT DNEVKNFWNS SIKKKLHLSH  120
GILPDNSIII PNYNNFITNP IPNPSFDNFY SFNPNVPSTN SFMSSINSPL ILDQMNNINH  180
NGDLNLTNQV IMPNSLPNLS FDSISNDPTW FNFNYPNHLQ HDLEYNPSVI KQDNSINSML  240
TSNISLNCTN GENFMDSTNA AIKNHQDLIM TLPKLSEMIK ENEDGILEST PVVSQHSDTM  300
VVNSTLPCTS YIMNPHNNVH RVVNKIELME SLHMSSSSSS SSSTSSSWSA FSCNQFMMNP  360
RTWDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069539.10.0transcription factor MYB26-like
TrEMBLM1DDW80.0M1DDW8_SOLTU; Uncharacterized protein
STRINGSolyc03g121740.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-78myb domain protein 26