PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g040440.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 741aa MW: 84859.8 Da PI: 6.7451

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g040440.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.7	1.1e-24	28	115	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fY+eYAk+ GF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk+++ +gkw+++++ eHnHel p Sopen03g040440.1 28 EFYKEYAKSEGFGTAKLSSRRSRATREFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRSsSGKWYIHSIIREHNHELLP 115 6**************************************999877....9****************9**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-22	28	115	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.8E-21	228	320	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.311	508	544	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.1E-7	514	542	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-7	519	546	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
MESAAGLGNS NVEVRDDMEF DSHEAAYEFY KEYAKSEGFG TAKLSSRRSR ATREFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRSSSGKW YIHSIIREHN HELLPAQVHF 120 FRSHRNVDPL NNDAKVRRKN MLASVSKQYG AYQFSGNLEN LFRNQHDRGR SLTLEEGDAQ 180 VLLELFVHMQ EENPKFFYAI DLNEEHRLRN VFWVDAKGMD SYSNFGDVVS FDTTYFTNKY 240 KVPLVLFIGA NHHVQPTLLG CALIADDTVH TFLWLMRTWC LAMGGQGPRI LLSDQNDNIK 300 AAVGAILTNT QHYFSLWSIL EKIPSRLDYL SMWHETFMAK FRKCIYKSWT EEHFEHRWWK 360 LIEKFSLRED EWVQSLYEDR KLWVPIFMRG VSFANLSMAS RSESVNSFFD KYIQSEMSLR 420 DFIGQHKLIL EDWYEEEAKA NFDAWHETPE LLSPSPFEKQ MLLLYTHEIF RKFQVEVIGA 480 SACHLKKESE DGTSITYAVK DFEANQDFVV EWDAPKSDLY CSCHLFEYKG YLCRHAIVVL 540 QMSGVFVIPS KYILQRWTNA ATSKHSISEG LDDAQAKVRR YNDLCRRAII LGEEGSLTQE 600 SYNIAVGAIA EALKKCQGNT LAANRKSGCT ATPAIQVDEV CQGNTLAARE LGPDSEAAQT 660 SKGSKRADSG NERESNRNTS NKKGKAPLEP EIANSAQEDF PQMDMPSSLY HPARFLTTLL 720 RGGDINKRGA ELLGEMLQEQ N

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

MESAAGLGNS NVEVRDDMEF DSHEAAYEFY KEYAKSEGFG TAKLSSRRSR ATREFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRSSSGKW YIHSIIREHN HELLPAQVHF  120
FRSHRNVDPL NNDAKVRRKN MLASVSKQYG AYQFSGNLEN LFRNQHDRGR SLTLEEGDAQ  180
VLLELFVHMQ EENPKFFYAI DLNEEHRLRN VFWVDAKGMD SYSNFGDVVS FDTTYFTNKY  240
KVPLVLFIGA NHHVQPTLLG CALIADDTVH TFLWLMRTWC LAMGGQGPRI LLSDQNDNIK  300
AAVGAILTNT QHYFSLWSIL EKIPSRLDYL SMWHETFMAK FRKCIYKSWT EEHFEHRWWK  360
LIEKFSLRED EWVQSLYEDR KLWVPIFMRG VSFANLSMAS RSESVNSFFD KYIQSEMSLR  420
DFIGQHKLIL EDWYEEEAKA NFDAWHETPE LLSPSPFEKQ MLLLYTHEIF RKFQVEVIGA  480
SACHLKKESE DGTSITYAVK DFEANQDFVV EWDAPKSDLY CSCHLFEYKG YLCRHAIVVL  540
QMSGVFVIPS KYILQRWTNA ATSKHSISEG LDDAQAKVRR YNDLCRRAII LGEEGSLTQE  600
SYNIAVGAIA EALKKCQGNT LAANRKSGCT ATPAIQVDEV CQGNTLAARE LGPDSEAAQT  660
SKGSKRADSG NERESNRNTS NKKGKAPLEP EIANSAQEDF PQMDMPSSLY HPARFLTTLL  720
RGGDINKRGA ELLGEMLQEQ N

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027771647.1	0.0	protein FAR1-RELATED SEQUENCE 4
Refseq	XP_027771648.1	0.0	protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A3Q7FW40	0.0	A0A3Q7FW40_SOLLC; Uncharacterized protein
STRING	Solyc03g121630.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]