PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g038650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 340aa MW: 37367.6 Da PI: 5.2076 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.2e-19 | 24 | 75 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +++ GVr+++ +grWvAeI+d ++ r +lg+f+tae+Aa+a+++a++ l+g+ Sopen03g038650.1 24 PRFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDQAARTLRGA 75 6799******.7*********....4456*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.96E-31 | 24 | 82 | No hit | No description |
Pfam | PF00847 | 3.1E-13 | 24 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.468 | 25 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-29 | 25 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-20 | 25 | 83 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.8E-36 | 25 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MKPPPPQPND GIRTRRKPSS RGHPRFVGVR QRPSGRWVAE IKDSLQKVRL WLGTFDTAED 60 AARAYDQAAR TLRGANARTN FELPASDSQQ GSSIVENSEP FNFEEACRTE ESENSLVGAL 120 KAKLFNSKNS RSFIQAYASN SSSELASKVK LSVPCIEIKK TSTQSEKLPK IGHVKNCSDD 180 LFRGNHNLDY ISLMTNDYQP MISSSQCQDN QLYSGTNSAI MWLNEQGQLP WGEPQMSPVQ 240 DEVSFSTTIN INNNINTNIF GGGNSTTATC TWPVSVSEPT VDLSAFGGID VLNGSIMMPD 300 MNGLTHTASV TTEQQFLQFE NGLWGVGDSA VWDPFLLSSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-16 | 23 | 81 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015161747.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF034-like | ||||
TrEMBL | M1A410 | 0.0 | M1A410_SOLTU; Uncharacterized protein | ||||
STRING | Solyc03g119800.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11869 | 18 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 7e-19 | related to AP2 11 |