PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g038410.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 397aa    MW: 44774.8 Da    PI: 5.3934
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g038410.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.4e-15102148353
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                        kGVr +k +g+++AeIrdps+    kr++lg+f t e A +a++a r ++
  Sopen03g038410.1 102 PKGVRMRK-WGKYAAEIRDPSQ---GKRIWLGTFETLEAASQAYEAKRAEF 148
                       59****99.**********964...3**********999999999999775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.871101161IPR001471AP2/ERF domain
PfamPF008479.1E-9102147IPR001471AP2/ERF domain
PRINTSPR003672.4E-6102113IPR001471AP2/ERF domain
SMARTSM003809.1E-11103157IPR001471AP2/ERF domain
CDDcd000181.83E-17103143No hitNo description
SuperFamilySSF541713.86E-14103147IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.7E-18103144IPR001471AP2/ERF domain
PRINTSPR003672.4E-6124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MKLEKDVKRE RVMDGCISSV RKVRIVYDDP DATDSESDDD QNAARFDKNA NRIKRVVKEI  60
VIPVVSWEND FKKCSKLDNI RIKDSKKIHE NKKVQLKSSA LPKGVRMRKW GKYAAEIRDP  120
SQGKRIWLGT FETLEAASQA YEAKRAEFDR IISLGKGKNL SPAPAECSMA CTSHPINGKN  180
RVYSHPSPSS VLDVPTSSAA APVESNENLT RDMARMPDSG SEDFNLSFED QMLHEFIKQR  240
QGISELIEHP LIEQGSISNS VMEMTEVNVR KKTKARQPTI ASCKILTKGT EDHSNDKSIF  300
SVLDEPTIMS PIHTELLHLN IEETAVTGNS LKLLGFDDNA LFDKDISQLF DPYTDAIGLD  360
NTFQCCDGWI ECLYCKIFKD EVDLDEVDLR WLDAVLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068523.10.0ethylene-responsive transcription factor ERF118
TrEMBLA0A3Q7FWB60.0A0A3Q7FWB6_SOLLC; Uncharacterized protein
STRINGSolyc03g119580.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127181519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.28e-20ERF family protein