PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g037940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 1057aa MW: 119205 Da PI: 7.9562 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.9 | 2e-07 | 282 | 375 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...............................................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...............................................tWktIartmgkgRtlkqcksrwqk 46 r+ W++eE e lv++ kq + +W+ +a++ gR++ +c+srw++ Sopen03g037940.1 282 RKEWSKEESENLVKGLKQQFQEmllqrsvnllsdedgcsresgdlddviasirdlaitpetmrlflpkvNWDQVASMYLPGRSGAECQSRWLN 374 789****************999******************************************************9888************9 PP H CS Myb_DNA-binding 47 y 47 + Sopen03g037940.1 375 W 375 8 PP | |||||||
2 | Myb_DNA-binding | 38.9 | 2.1e-12 | 435 | 479 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r WT eEd +l av+ +G +W +a+ + gRt+ qc +rw k Sopen03g037940.1 435 RREWTDEEDIRLSAAVETFGESNWQFVASVIE-GRTGTQCSNRWIK 479 678*****************************.***********76 PP | |||||||
3 | Myb_DNA-binding | 38.5 | 2.7e-12 | 489 | 546 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 g+W+++Ed++l+ av ++ ++ Wk++a++++ gRt qc++rw + Sopen03g037940.1 489 GKWSADEDKRLKVAVMLFYPKtwrnvvqsvpwrtpIWKKVAQYVP-GRTHVQCRERWVN 546 89*****************99************************.***********87 PP | |||||||
4 | Myb_DNA-binding | 46.4 | 9.4e-15 | 556 | 597 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd++l+ a+ ++G W+++a++++ Rt++qc+ rw Sopen03g037940.1 556 EWTEEEDLKLKSAIDEHGYS-WSKVAACIP-PRTDNQCRRRWIV 597 7*****************99.*********.9**********75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.155 | 277 | 376 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-6 | 279 | 300 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-6 | 281 | 378 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00337 | 339 | 375 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-6 | 349 | 362 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.16E-12 | 358 | 426 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-6 | 363 | 398 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 7.789 | 377 | 429 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0018 | 381 | 431 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-9 | 399 | 437 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.24E-18 | 416 | 487 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.877 | 430 | 485 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-12 | 434 | 483 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.62E-9 | 437 | 479 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-15 | 438 | 487 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.4E-11 | 438 | 499 | No hit | No description |
SMART | SM00717 | 1.6E-9 | 487 | 550 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-16 | 489 | 553 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.676 | 489 | 548 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.18E-6 | 490 | 548 | No hit | No description |
Pfam | PF00249 | 1.7E-5 | 525 | 546 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.08E-24 | 528 | 601 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.937 | 549 | 603 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-13 | 553 | 601 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-17 | 554 | 596 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-13 | 556 | 596 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.61E-11 | 556 | 599 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1057 aa Download sequence Send to blast |
MASDSDDDFS DNDYDDGFQE DMEALKKACL FAGKDADDLQ PSSSTGDVAA GDDDDDDDDV 60 TPSVSDANEY DDDIACLRNL QERFSLSTEL CEPLNLKPLC SIFPPGSEGD EENDLETLRA 120 IERRFAAYDD DSGTRRKESP LDKFEQIEPY RFLKDAVMTL LVLRISLRGI ILMLKPQKRQ 180 KNRSCQKVMR DKMMQTEARL EELKKLIERV KILKSFQLTC KKRMGRALSQ KRDARVQLIS 240 LPKQRFSSKG KKLSATHCGP PENSHVASYR EALTHFAVSL SRKEWSKEES ENLVKGLKQQ 300 FQEMLLQRSV NLLSDEDGCS RESGDLDDVI ASIRDLAITP ETMRLFLPKV NWDQVASMYL 360 PGRSGAECQS RWLNWEDPLI KHEGWDLLEE KNLLQVVQQK KMSNWVDIST LLGVCRTPFQ 420 CLSHYQRSLN ASIIRREWTD EEDIRLSAAV ETFGESNWQF VASVIEGRTG TQCSNRWIKS 480 IHPAMKRCGK WSADEDKRLK VAVMLFYPKT WRNVVQSVPW RTPIWKKVAQ YVPGRTHVQC 540 RERWVNSLDP SLKLDEWTEE EDLKLKSAID EHGYSWSKVA ACIPPRTDNQ CRRRWIVLFP 600 DEVSMLKEAK KIRREAFISN FVDREDERPA LRPNDIVPTQ KLSSRAGRET TSVNKKRKLR 660 PRATRDDMAP RCDAMSEMEK PHAEGSEGPE SSHLIKSSLL PSRDQGCNDA MKKNKRPPSK 720 LRRTKKSTPN DKVPEASVSS DSTIADGNIC KRRRRSTSSL VKKKSRTVPS ASSMVESTTT 780 DGNICKRRRR ASSLVKPKSR ESSSSLPNLS SSMAVVEEAE SLVQDSRKAK NVMDKRNSAS 840 EYDDPCISPQ GHPLAHPHLD EGTADLNVGE NENASATGLQ DDSLLLQRNA VVCTDENASQ 900 FEASATPGTR EGEDYGASVC HKLNKCNQLE NNVKSSLDYL PQTADDGMTL ASFVCKLRAK 960 VSSSSSTKVA RLHSGKAPSK AMSGDHSSIS CISGGHDGMD KRSKQECTSS NQTSGTKVED 1020 DMLLSSFMRR VKKRECTEVG DDMPLSLFVG RLKRERH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-26 | 385 | 595 | 6 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-26 | 385 | 595 | 6 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027771550.1 | 0.0 | uncharacterized protein LOC107015451 isoform X2 | ||||
TrEMBL | A0A3Q7FW18 | 0.0 | A0A3Q7FW18_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g119050.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10876 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-153 | myb domain protein 4r1 |