PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g037940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 1057aa    MW: 119205 Da    PI: 7.9562
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g037940.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07282375147
                       TSSS-HHHHHHHHHHHHHTTTT...............................................-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...............................................tWktIartmgkgRtlkqcksrwqk 46 
                       r+ W++eE e lv++ kq   +                                               +W+ +a++   gR++ +c+srw++
  Sopen03g037940.1 282 RKEWSKEESENLVKGLKQQFQEmllqrsvnllsdedgcsresgdlddviasirdlaitpetmrlflpkvNWDQVASMYLPGRSGAECQSRWLN 374
                       789****************999******************************************************9888************9 PP

                       H CS
   Myb_DNA-binding  47 y 47 
                       +
  Sopen03g037940.1 375 W 375
                       8 PP

2Myb_DNA-binding38.92.1e-12435479146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r  WT eEd +l  av+ +G  +W  +a+ +  gRt+ qc +rw k
  Sopen03g037940.1 435 RREWTDEEDIRLSAAVETFGESNWQFVASVIE-GRTGTQCSNRWIK 479
                       678*****************************.***********76 PP

3Myb_DNA-binding38.52.7e-12489546246
                       SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 
                       g+W+++Ed++l+ av ++ ++               Wk++a++++ gRt  qc++rw +
  Sopen03g037940.1 489 GKWSADEDKRLKVAVMLFYPKtwrnvvqsvpwrtpIWKKVAQYVP-GRTHVQCRERWVN 546
                       89*****************99************************.***********87 PP

4Myb_DNA-binding46.49.4e-15556597346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        WT+eEd++l+ a+ ++G   W+++a++++  Rt++qc+ rw  
  Sopen03g037940.1 556 EWTEEEDLKLKSAIDEHGYS-WSKVAACIP-PRTDNQCRRRWIV 597
                       7*****************99.*********.9**********75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.155277376IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.5E-6279300IPR009057Homeodomain-like
SMARTSM007172.4E-6281378IPR001005SANT/Myb domain
CDDcd001670.00337339375No hitNo description
Gene3DG3DSA:1.10.10.609.5E-6349362IPR009057Homeodomain-like
SuperFamilySSF466892.16E-12358426IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-6363398IPR009057Homeodomain-like
PROSITE profilePS512947.789377429IPR017930Myb domain
SMARTSM007170.0018381431IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-9399437IPR009057Homeodomain-like
SuperFamilySSF466896.24E-18416487IPR009057Homeodomain-like
PROSITE profilePS5129418.877430485IPR017930Myb domain
SMARTSM007177.0E-12434483IPR001005SANT/Myb domain
CDDcd001671.62E-9437479No hitNo description
Gene3DG3DSA:1.10.10.601.5E-15438487IPR009057Homeodomain-like
PfamPF139213.4E-11438499No hitNo description
SMARTSM007171.6E-9487550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-16489553IPR009057Homeodomain-like
PROSITE profilePS500908.676489548IPR017877Myb-like domain
CDDcd001671.18E-6490548No hitNo description
PfamPF002491.7E-5525546IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-24528601IPR009057Homeodomain-like
PROSITE profilePS5129421.937549603IPR017930Myb domain
SMARTSM007171.3E-13553601IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-17554596IPR009057Homeodomain-like
PfamPF002491.2E-13556596IPR001005SANT/Myb domain
CDDcd001671.61E-11556599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1057 aa     Download sequence    Send to blast
MASDSDDDFS DNDYDDGFQE DMEALKKACL FAGKDADDLQ PSSSTGDVAA GDDDDDDDDV  60
TPSVSDANEY DDDIACLRNL QERFSLSTEL CEPLNLKPLC SIFPPGSEGD EENDLETLRA  120
IERRFAAYDD DSGTRRKESP LDKFEQIEPY RFLKDAVMTL LVLRISLRGI ILMLKPQKRQ  180
KNRSCQKVMR DKMMQTEARL EELKKLIERV KILKSFQLTC KKRMGRALSQ KRDARVQLIS  240
LPKQRFSSKG KKLSATHCGP PENSHVASYR EALTHFAVSL SRKEWSKEES ENLVKGLKQQ  300
FQEMLLQRSV NLLSDEDGCS RESGDLDDVI ASIRDLAITP ETMRLFLPKV NWDQVASMYL  360
PGRSGAECQS RWLNWEDPLI KHEGWDLLEE KNLLQVVQQK KMSNWVDIST LLGVCRTPFQ  420
CLSHYQRSLN ASIIRREWTD EEDIRLSAAV ETFGESNWQF VASVIEGRTG TQCSNRWIKS  480
IHPAMKRCGK WSADEDKRLK VAVMLFYPKT WRNVVQSVPW RTPIWKKVAQ YVPGRTHVQC  540
RERWVNSLDP SLKLDEWTEE EDLKLKSAID EHGYSWSKVA ACIPPRTDNQ CRRRWIVLFP  600
DEVSMLKEAK KIRREAFISN FVDREDERPA LRPNDIVPTQ KLSSRAGRET TSVNKKRKLR  660
PRATRDDMAP RCDAMSEMEK PHAEGSEGPE SSHLIKSSLL PSRDQGCNDA MKKNKRPPSK  720
LRRTKKSTPN DKVPEASVSS DSTIADGNIC KRRRRSTSSL VKKKSRTVPS ASSMVESTTT  780
DGNICKRRRR ASSLVKPKSR ESSSSLPNLS SSMAVVEEAE SLVQDSRKAK NVMDKRNSAS  840
EYDDPCISPQ GHPLAHPHLD EGTADLNVGE NENASATGLQ DDSLLLQRNA VVCTDENASQ  900
FEASATPGTR EGEDYGASVC HKLNKCNQLE NNVKSSLDYL PQTADDGMTL ASFVCKLRAK  960
VSSSSSTKVA RLHSGKAPSK AMSGDHSSIS CISGGHDGMD KRSKQECTSS NQTSGTKVED  1020
DMLLSSFMRR VKKRECTEVG DDMPLSLFVG RLKRERH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-263855956155MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-263855956155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771550.10.0uncharacterized protein LOC107015451 isoform X2
TrEMBLA0A3Q7FW180.0A0A3Q7FW18_SOLLC; Uncharacterized protein
STRINGSolyc03g119050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108762124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-153myb domain protein 4r1