PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g037310.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-X1
Protein Properties Length: 1125aa    MW: 122130 Da    PI: 8.155
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g037310.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.22.4e-05388405118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG+H C +lCH+GpC+ C
  Sopen03g037310.1 388 CGNHICRELCHPGPCGDC 405
                       ****************99 PP
2zf-NF-X121.55.2e-07446463118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG H+C++ CH G+C pC
  Sopen03g037310.1 446 CGVHRCEAVCHSGDCAPC 463
                       ****************** PP
3zf-NF-X118.64.1e-06542560119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H+C++lCH G CppC 
  Sopen03g037310.1 542 CGQHSCESLCHSGHCPPCL 560
                       ******************6 PP
4zf-NF-X118.73.8e-06652667116
          zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                       CG H+C ++CH+ pC+
  Sopen03g037310.1 652 CGLHSCARTCHPSPCD 667
                       ***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.12E-5145217No hitNo description
PROSITE profilePS500168.84154215IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.126157213IPR001841Zinc finger, RING-type
PROSITE patternPS013590157212IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.44E-6246307No hitNo description
SMARTSM004380.023269287IPR000967Zinc finger, NF-X1-type
PfamPF014228.4271286IPR000967Zinc finger, NF-X1-type
CDDcd060081.92E-11314362No hitNo description
PfamPF014220.0022324341IPR000967Zinc finger, NF-X1-type
SMARTSM004380.04324343IPR000967Zinc finger, NF-X1-type
CDDcd060084.21E-9378423No hitNo description
PfamPF014223.3E-4388405IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0014388407IPR000967Zinc finger, NF-X1-type
CDDcd060087.07E-14436484No hitNo description
PfamPF014222.6E-6446463IPR000967Zinc finger, NF-X1-type
SMARTSM004385.6E-5446465IPR000967Zinc finger, NF-X1-type
PfamPF0142219504515IPR000967Zinc finger, NF-X1-type
SMARTSM00438260504538IPR000967Zinc finger, NF-X1-type
CDDcd060081.23E-8532584No hitNo description
PfamPF014221.0E-4542559IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4542561IPR000967Zinc finger, NF-X1-type
CDDcd060081.82E-4589637No hitNo description
SMARTSM004380.34599617IPR000967Zinc finger, NF-X1-type
PfamPF014227.2E-4652667IPR000967Zinc finger, NF-X1-type
SMARTSM004380.011652682IPR000967Zinc finger, NF-X1-type
CDDcd060081.61E-4680729No hitNo description
PfamPF0142218684710IPR000967Zinc finger, NF-X1-type
SMARTSM004380.046691712IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3302.5E-4932977IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1125 aa     Download sequence    Send to blast
MSFPAQNNRR NNNSNRPRNN NNNNNPVVQS GGARREWVAR GSAPTNTVPF SAAPVTPVTT  60
TTVVTPGFGG NGRDNENVSS APVNRFQNQN QTYGEPKFNR GMYRGRGRGS YNHQENRMER  120
PVREVSGRIN QERVKDPNLP QLVQEIEEKL LKGNIECMIC YDMVRRSAPM WSCSSCYSIF  180
HLHCTKKWAR APTSVDTSAE KNQRFNWRCP GCQSVQLTSS RDIRYLCFCG KRQDPPSDLY  240
LTPHSCGEPC GKKLEKELPG NGLSEEDLCP HVCVLQCHPG PCPPCKAFAP ARSCPCGKEV  300
ITTRCSDRKS VLTCGQQCGK LLDCGRHRCE QTCHVGSCGH CQIVVDAYCF CKKKTESLLC  360
GDMGVKGDIK MEDGVFSCNS VCGKKLSCGN HICRELCHPG PCGDCALLPS KVKACCCGKT  420
SLEEERHSCL DPIPTCSKVC GKRLRCGVHR CEAVCHSGDC APCLVPVTQR CRCGSTSRTV  480
ECYRTQAEDE QFTCDRPCGQ KKNCGRHRCS ERCCPLSNPK NSITGGWNPH FCSMACEKKL  540
RCGQHSCESL CHSGHCPPCL ETIFTDLTCA CGRTSIPPPL PCGTPLPSCQ LPCSVSQPCG  600
HPPTHSCHFG DCLPCAVPVA KECVGGHVIL RNIPCGSKDI RCNKLCGKTR QCGLHSCART  660
CHPSPCDVSA GPSNGSRASC GQTCGAPRRD CRHTCTALCH PSSSCPDVRC EFPVTITCSC  720
GRITANVPCD AGGQIVDSVL EASIIHKLPS SLQPIEINGK KVPLGQRKLT CDDECAKMEK  780
KKVLSDAFGI TPPNLESLHF GENAAVSEVL GDLLRRDAKW VLSIEERCKF LVLGRSRGGL  840
NALKVHVFCP MLKEKRDAIR LIAARWKLSV NAAGWEPKRF IAVHVTPKSK APSRILGPKG  900
CTVNNIAQPA VFDSLVDMDP RLVVALFDLP RDADISALVL RFGGECELVW LNDKNALAVF  960
SDPARAATAM RRLDQGSAYC GAAVVHQSGV ASAVASTTNV WGVSGGAKDA GGVAAALKGN  1020
PWKKAVVQEP HLRESLWDAE EWSKNPTDLA APSAWRANEA PPTASSNRWS VLEPEIASSL  1080
PRASITIKEP VTETQVGGSV LPPKPQDMGI DDMADVVDDW DKAYD
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070225.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM1B4730.0M1B473_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000367740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1