PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g036130.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 252aa    MW: 28163.2 Da    PI: 10.276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g036130.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19120169255
               AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr ++ +grW AeIrd       r r++lg+f+t+eeAa+a++aa++ l+g
  Sopen03g036130.1 120 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEEAARAYDAAARWLRG 169
                       69*******.**********32....25**********************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.86E-20119178No hitNo description
PROSITE profilePS5103222.062120177IPR001471AP2/ERF domain
PfamPF008472.1E-13120169IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21120178IPR016177DNA-binding domain
SMARTSM003802.8E-31120183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-29120177IPR001471AP2/ERF domain
PRINTSPR003672.8E-10121132IPR001471AP2/ERF domain
PRINTSPR003672.8E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MYNSLSQKAE PFFFSTQKPL YPNEPNHHHN FSIDNTNYSL DPFWDNYSVS ANENVNEKSP  60
VLEGIAAVVG EHVLFGHNNN NNNNQNKSDD PNSSAVSILK RTCPEEKKKN NNNVQSVEKS  120
YRGVRKRPWG RWSAEIRDRI GRCRHWLGTF DTPEEAARAY DAAARWLRGS KARTNFQIPP  180
IVPLPTSPTS TSSSSNSSRG LKKKNKNGGS IANNQRKCSV VTSAAHLFSS NELSKGVSVT  240
VELDLKLGFG RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-16109176371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069047.10.0ethylene-responsive transcription factor ERF084
TrEMBLA0A3Q7GHY91e-144A0A3Q7GHY9_SOLLC; Uncharacterized protein
STRINGSolyc03g117230.1.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115522225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-26ERF family protein