PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g035820.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 346aa    MW: 38754.2 Da    PI: 9.2046
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g035820.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.4e-29167227160
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                       ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+k
  Sopen03g035820.1 167 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSVEDQSILVATYEGEHNHSK 227
                       58***************************99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28161227IPR003657WRKY domain
PROSITE profilePS5081124.925162228IPR003657WRKY domain
SuperFamilySSF1182901.7E-24164226IPR003657WRKY domain
SMARTSM007742.0E-33167227IPR003657WRKY domain
PfamPF031068.0E-24168225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEFTSLVDTS LDLNFRPLRV SDELPKQEVE SNFIGLGRDL VPVKDEASNL MEELKRVNAE  60
NKKLTEMLTV MCQNYNSLRN QLTEYMSKQN SSTSGADQDQ NSDGSKKIKI ENNNNNEIVK  120
SSVQVLNSES SSSDEDSSPK KPREEHIKTK TSRVYMRTEP SDTSLIVKDG YQWRKYGQKV  180
TRDNPSPRAY FKCSFAPTCP VKKKVQRSVE DQSILVATYE GEHNHSKVDT AGPVTTTSPS  240
SRFNPKNNTY AAAVMPRQTL TLDLAEPKTL QNDIKKVHSI TSTSSASGQK RKSPGTDQQQ  300
QNRPEFQHFL IEQMASSLTK DPSFQAALAA AISGKFLQNN SNTKDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-191662251371WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6542910.0FJ654291.1 Solanum lycopersicum JA-induced WRKY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068329.10.0probable WRKY transcription factor 40
TrEMBLA0A3Q7GHS30.0A0A3Q7GHS3_SOLLC; Uncharacterized protein
STRINGSolyc03g116890.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-80WRKY DNA-binding protein 40