PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g034530.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 442aa    MW: 48519.2 Da    PI: 6.9926
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g034530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH512.5e-16237283455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  Sopen03g034530.1 237 VHNQSERRRRDRINQRMKALQRLVPNA-----SKTDKASMLDEVIDYLKQLQ 283
                       6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.7E-19231302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.057233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-19236310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-14237283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.19E-10238287No hitNo description
SMARTSM003533.4E-17239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MSHCTVPTWN PSYQRQEHVV EAEEANKYPH LHNQQIQINH LLPMSSKCEE VAELTWEKGQ  60
LGMHGLGGIL SISQAKQTLG RTGDTLDSIV HQATHHAKNQ TSIHQNYDQN EDQDLKTGVL  120
YSGGKWGESS QQMAPPRATV LAKKRMRPSE SDPQYGGAED HEYAEGSACA SASATFYREN  180
DTTMVTWPSF DESSRSIKSK TTCDEDSACH GGGSENKEEE HETKRSNSSR RSRAAAVHNQ  240
SERRRRDRIN QRMKALQRLV PNASKTDKAS MLDEVIDYLK QLQAQVQLMS STPRNMAPQM  300
MMPLGMHQHI QMSLLARMGV GVGLGMGMGM FDMTALARAA AAAAASATTH PNQMTTAPIN  360
IPFTPSGAFA LPAAPANSVS PASATTSATT NSIPFTNPYS AFLPQSMDME FFNNMAALYR  420
QQLATQSTQI TGSKLNQENQ TE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068182.10.0transcription factor UNE10 isoform X1
TrEMBLA0A3Q7FTV70.0A0A3Q7FTV7_SOLLC; Uncharacterized protein
STRINGSolyc03g115540.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-35bHLH family protein