PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g034080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 341aa MW: 38729.2 Da PI: 6.0006 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 96.1 | 6.9e-30 | 53 | 173 | 3 | 112 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasns 85 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++ k i+ l+ + +++s++e+++++ + ++n Sopen03g034080.1 53 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEATKLDIDTLPPLpvppeyftrfQQPSHEEFSDVRAQWLNANT 145 78*************************************************************444444444433333333444444444333 PP TCP 86 ssgkaaksaa.kskksqksaasalnlak 112 s ++ +++ s+++++++ ++ l + Sopen03g034080.1 146 SYLEHGRNKSiASNEESNQQDNMFTLGN 173 3333333333355555555555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.674 | 54 | 112 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.0E-26 | 54 | 164 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MNSLSGNNFE TKQESNNDSR LTSKTTSAPP SITSRQWGAN KNPRIVRVSR TFGGKDRHSK 60 VCTIRGLRDR RIRLSVPTAI QLYDLQDRLG LSQPSKVVDW LLEATKLDID TLPPLPVPPE 120 YFTRFQQPSH EEFSDVRAQW LNANTSYLEH GRNKSIASNE ESNQQDNMFT LGNHRSSNLP 180 GMPFNSYNYQ WDHQPNSNLS LGHFGHNNSF SSQIDDDQSH QNTSFPLSLG SSSSPFPSSS 240 QLYFNPITTT FQPIVPSPNY ITNHHPIESH DPRANMNHFN FLSSTTSHNN QLVMPTLNLI 300 SSQMKPFSLN NDPRWMSSRD DEDDDDDDDD DDNQPHEGRA I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-17 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-17 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068460.1 | 0.0 | transcription factor TCP5 | ||||
Refseq | XP_015068461.1 | 0.0 | transcription factor TCP5 | ||||
TrEMBL | G3BGU4 | 0.0 | G3BGU4_SOLLC; TCP transcription factor 4 | ||||
STRING | Solyc03g115010.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 6e-46 | plastid transcription factor 1 |