PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g033910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28588.2 Da PI: 9.3112 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.1 | 6.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+eys+ Sopen03g033910.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 102 | 7.9e-34 | 80 | 174 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ + s++ e+akLk+++e Lqr+q+h+ Ge+L++Ls+keLq+Le+qL+++lk+iRs+Kn+l++e+i+elqkk k+lqe+n++L+k++ Sopen03g033910.1 80 LNATDIVTPGSWTLEHAKLKARLEVLQRNQKHYAGEELDTLSMKELQNLEHQLDSALKHIRSRKNQLMHESISELQKKDKALQEQNNNLSKQV 172 555555666799********************************************************************************9 PP K-box 99 ee 100 +e Sopen03g033910.1 173 KE 174 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.184 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.44E-42 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 6.54E-34 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 16.202 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.9E-28 | 90 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYSTD 60 SCMERILERY ERYSYAERQL NATDIVTPGS WTLEHAKLKA RLEVLQRNQK HYAGEELDTL 120 SMKELQNLEH QLDSALKHIR SRKNQLMHES ISELQKKDKA LQEQNNNLSK QVKEREKEMA 180 QQTPWEQQSH DHLNSSSFGL PHPFNNLHIG EAYPNAGDNG EVEGSSRQQQ QNSTSVMPPW 240 MLRHLNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-22 | 1 | 86 | 1 | 85 | MEF2 CHIMERA |
6byy_B | 2e-22 | 1 | 86 | 1 | 85 | MEF2 CHIMERA |
6byy_C | 2e-22 | 1 | 86 | 1 | 85 | MEF2 CHIMERA |
6byy_D | 2e-22 | 1 | 86 | 1 | 85 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014057 | 0.0 | BT014057.1 Lycopersicon esculentum clone 133155F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068141.1 | 0.0 | agamous-like MADS-box protein AGL8 homolog | ||||
Swissprot | Q42429 | 1e-142 | AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog | ||||
TrEMBL | A0A3Q7FTD8 | 0.0 | A0A3Q7FTD8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g114830.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-106 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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