PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g033540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 24817.3 Da PI: 10.7236 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.7e-16 | 32 | 81 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+ s ++ r +lg+f+ aeeAa a++ a++ l+g Sopen03g033540.1 32 RFIGVRQRP-SGRWVAEIKQTS---QKLRLWLGTFDKAEEAAMAYDSAARLLRG 81 689******.7******99932...36***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.60E-30 | 31 | 91 | No hit | No description |
Pfam | PF00847 | 3.3E-11 | 32 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-27 | 32 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-30 | 32 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-19 | 32 | 89 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.94 | 32 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-7 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-7 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MENSQSPSKS LNNSSKNIQQ KINPISSNDG KRFIGVRQRP SGRWVAEIKQ TSQKLRLWLG 60 TFDKAEEAAM AYDSAARLLR GKSAKTNFNN HGIFKPNEEN YSLLEKDPRL YQLMKHAIMK 120 KFAGKYQNNE CLETEETENR NPDRCRNNVR RVKHWMQRFI DRFLLLYLSL FREQIDEPLP 180 PVFSPNKRTR TDQLSTLVSH RSNLKLTSKM TI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068974.1 | 8e-97 | ethylene-responsive transcription factor ERN1-like | ||||
TrEMBL | A0A3Q7FSJ6 | 4e-94 | A0A3Q7FSJ6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g114440.1.1 | 7e-95 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 8e-19 | related to AP2 11 |