PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g032180.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 527aa MW: 58591.8 Da PI: 7.1414

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g032180.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.8	2.9e-30	237	296	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+ +d +++++tYeg+Hnh+ Sopen03g032180.1 237 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApNCPVRKQVQRCIQDMSILITTYEGTHNHP 296 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.7E-31	223	298	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-27	229	298	IPR003657	WRKY domain
PROSITE profile	PS50811	28.242	232	298	IPR003657	WRKY domain
SMART	SM00774	1.5E-36	237	297	IPR003657	WRKY domain
Pfam	PF03106	7.7E-27	238	296	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MHMETVFRKS THGGLVKQDI KIKASEEGFV EDINDLKVGK ERKSIHNEDD NLKSSQQKDL 60 TGDKEDDQLE SAKADMEEVM EENQRLKKHL DKIMKDYRNL QMQFHEVEQR DAEKTNTNVK 120 HDEAELVSLS LGRTSSDTKK ELSKLILSKK ENDEKEEDNL TLALDCKFQS STKSSPSNLS 180 PENSLGEVKD DEKATDQTWP PHKVLKTMRN EEDDVTQQNP TKRAKVSVRV RCDTPTMNDG 240 CQWRKYGQKI AKGNPCPRAY YRCTVAPNCP VRKQVQRCIQ DMSILITTYE GTHNHPLPHS 300 ATSMAFTTSA AASVLLSGSS SSGSGPTSST TSATTSALNY YFSDNSKPNP FYNLPHSSIS 360 SSSHSQYPTI TLDLTSNSST SSFPGQNHRT IANSNNYPSR YNNNNNSSTN ILNFGSFESN 420 HLLPISWSNR NNQDTHSQSY LQNNIKSAAP TQTLLPQDTI AAATKAITSD PKFQSALAVA 480 LTSIIGSRSG NHHIDEKSGQ NMKVTQPFPV LCSFPSTSPG DHKDYTL

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MHMETVFRKS THGGLVKQDI KIKASEEGFV EDINDLKVGK ERKSIHNEDD NLKSSQQKDL  60
TGDKEDDQLE SAKADMEEVM EENQRLKKHL DKIMKDYRNL QMQFHEVEQR DAEKTNTNVK  120
HDEAELVSLS LGRTSSDTKK ELSKLILSKK ENDEKEEDNL TLALDCKFQS STKSSPSNLS  180
PENSLGEVKD DEKATDQTWP PHKVLKTMRN EEDDVTQQNP TKRAKVSVRV RCDTPTMNDG  240
CQWRKYGQKI AKGNPCPRAY YRCTVAPNCP VRKQVQRCIQ DMSILITTYE GTHNHPLPHS  300
ATSMAFTTSA AASVLLSGSS SSGSGPTSST TSATTSALNY YFSDNSKPNP FYNLPHSSIS  360
SSSHSQYPTI TLDLTSNSST SSFPGQNHRT IANSNNYPSR YNNNNNSSTN ILNFGSFESN  420
HLLPISWSNR NNQDTHSQSY LQNNIKSAAP TQTLLPQDTI AAATKAITSD PKFQSALAVA  480
LTSIIGSRSG NHHIDEKSGQ NMKVTQPFPV LCSFPSTSPG DHKDYTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	237	298	14	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU017421	0.0	GU017421.1 Solanum lycopersicum WRKY72 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015069171.1	0.0	probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	0.0	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	M1BJA0	0.0	M1BJA0_SOLTU; Uncharacterized protein
STRING	Solyc03g113120.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	6e-59	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]