PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g031970.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 272aa    MW: 31338.8 Da    PI: 4.4072
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g031970.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-16136182148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT eEd +l+++v+++G + W+ Ia+ +  gR +kqc++rw+++l
  Sopen03g031970.1 136 KGQWTIEEDRILINLVERFGDRKWSQIAQVLK-GRIGKQCRERWHNHL 182
                       799****************************9.*************97 PP
2Myb_DNA-binding29.51.7e-09190218332
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg 32 
                        WT+eEd +l++a+ + G++ W+ Ia+++ 
  Sopen03g031970.1 190 LWTEEEDMILIKAHSEIGNK-WAEIAKKLA 218
                       6*******************.******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.783131186IPR017930Myb domain
SMARTSM007176.3E-14135184IPR001005SANT/Myb domain
SuperFamilySSF466896.47E-26135220IPR009057Homeodomain-like
PfamPF002499.3E-16136182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-27137196IPR009057Homeodomain-like
CDDcd001679.20E-14139182No hitNo description
PROSITE profilePS500908.095183223IPR017877Myb-like domain
SMARTSM007170.015187235IPR001005SANT/Myb domain
PfamPF002495.6E-8190218IPR001005SANT/Myb domain
CDDcd001678.91E-6191219No hitNo description
Gene3DG3DSA:1.10.10.601.1E-10197219IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MIDMNNGYDP LFDPLSNHDD NFSSIGQDFN FGYEFKPFEQ NGSASGSTLI MKNFESSMDS  60
MNYNFMCNQD MKPINFNVVP DESSSCVSNN IDINGTNCIY DDDKEIDVRN NKQILASSSS  120
MRKIGRATRN KSKSVKGQWT IEEDRILINL VERFGDRKWS QIAQVLKGRI GKQCRERWHN  180
HLRPDIKKDL WTEEEDMILI KAHSEIGNKW AEIAKKLAGN STEATIEEVP TFSDEFGLDN  240
KLFDDLEIPY ELIQDGEVNH KDLDLMDFDY SE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-35135224392MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-3413522457146MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-3413522457146MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-35135224392C-Myb DNA-Binding Domain
1msf_C6e-35135224392C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771216.10.0transcription factor MYB98-like
SwissprotQ9S7L22e-45MYB98_ARATH; Transcription factor MYB98
TrEMBLK4BKE21e-173K4BKE2_SOLLC; Uncharacterized protein
STRINGSolyc03g112890.1.11e-174(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.19e-48myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]