PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g030600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 288aa MW: 31027.8 Da PI: 8.461 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 129.1 | 1.5e-40 | 52 | 155 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql+ fw++q i k df++h+lP++rikki+k+d++v+misae+ +ll+kacelfi elt rswl+a+e++rrtlkk d ++++++t+ fd Sopen03g030600.1 52 QLRLFWAAQlqeIIKIRDFREHSLPISRIKKIMKSDKEVRMISAESTILLAKACELFIQELTHRSWLKAQECQRRTLKKIDFFTVLKETELFD 144 79******965566789**************************************************************************** PP NF-YC 91 flvdivprdel 101 flvd + de+ Sopen03g030600.1 145 FLVDAISMDET 155 ******99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.48E-22 | 62 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.8E-17 | 74 | 132 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.3E-26 | 75 | 150 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MASHSDPVAA NAEVAAAVNA EAAAAAVNAE VAATAVNAEA AAAAVNAEAV AQLRLFWAAQ 60 LQEIIKIRDF REHSLPISRI KKIMKSDKEV RMISAESTIL LAKACELFIQ ELTHRSWLKA 120 QECQRRTLKK IDFFTVLKET ELFDFLVDAI SMDETEEEAP TYVPGMLGNI PNRIPYCYSP 180 MGPPAPPMAP LAPSIGPPAP SMGSPTPSMG PPTPSMPTPP RGIMGKRAMP WVAPSMHVPP 240 PLYPRQFRWY AAGGNPYATG GSSGQGSGDP QRKVNLEQVR RTGIVRFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-30 | 60 | 150 | 3 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027771200.1 | 1e-138 | nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9SMP0 | 2e-43 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A3Q7FNU8 | 1e-119 | A0A3Q7FNU8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g111460.1.1 | 1e-117 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15807 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 1e-40 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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