PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g030590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 266aa MW: 29114.6 Da PI: 6.9483 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 132.3 | 1.5e-41 | 53 | 155 | 1 | 100 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql+ fw++q i + df+ h+lP++rikki+k+d++v+misae+P+ll+kacelfi elt rswl+a+e++rrtlkk d ++ +++t+ fd Sopen03g030590.1 53 QLRLFWAAQlqeIIQIRDFRGHSLPISRIKKIMKSDKEVRMISAESPILLAKACELFIQELTHRSWLKAQECQRRTLKKIDFFTMLKETELFD 145 79******966666889**************************************************************************** PP NF-YC 91 flvdivprde 100 flvd + de Sopen03g030590.1 146 FLVDAISMDE 155 *****99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.37E-22 | 63 | 147 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-17 | 75 | 133 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.9E-27 | 76 | 151 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MASHSDPVAA NAEVAAAVNA EEEVAAVNAE AVAVAEATAQ PIVNANDYLL QQQLRLFWAA 60 QLQEIIQIRD FRGHSLPISR IKKIMKSDKE VRMISAESPI LLAKACELFI QELTHRSWLK 120 AQECQRRTLK KIDFFTMLKE TELFDFLVDA ISMDEPEEEA PTYVPGMLGN IPNRIPYYYS 180 PMGPPPPPMA PLAPSVRPPA PSMGPPTPSM PTPPRGIMGR RAMPWVAPSM HVPPPLYPRK 240 FGWYAAGGNP YATGGSSGQG SGNPRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-31 | 60 | 151 | 2 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027771079.1 | 0.0 | nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9SMP0 | 7e-46 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A3Q7FNU8 | 1e-137 | A0A3Q7FNU8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g111460.1.1 | 1e-139 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15807 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 9e-42 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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