PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g030580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 261aa MW: 28501 Da PI: 7.0435 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 125.7 | 1.8e-39 | 48 | 151 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql+ fw++q i + df+ h+lP++r+kki+k d++v+misae+P+ll+kacelfi elt rsw +a+e++rrtlk d + +++t+ fd Sopen03g030580.1 48 QLQLFWAAQlqeIMHIRDFRGHSLPISRMKKIMKLDKEVRMISAESPILLAKACELFIQELTHRSWFKAQECQRRTLKNIDFITMLKETELFD 140 89******966666789**************************************************************************** PP NF-YC 91 flvdivprdel 101 flvd + de+ Sopen03g030580.1 141 FLVDAISMDET 151 ******99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.14E-21 | 58 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.0E-16 | 70 | 128 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.9E-25 | 71 | 146 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MASHSDPVAA KAEVAAAVNA EAAAAAVAVA EATAQPIVNA NDYLLQQQLQ LFWAAQLQEI 60 MHIRDFRGHS LPISRMKKIM KLDKEVRMIS AESPILLAKA CELFIQELTH RSWFKAQECQ 120 RRTLKNIDFI TMLKETELFD FLVDAISMDE TEEEAPTYVP RMLGNIPNRI PYCYSPMGPP 180 APPMVPLAPS IGPPAPSMGP PAPSMPAPPR GIMGRRAMPW VAPSMHVPPP LYPRQFGWYA 240 TGGNPYATGG SSGQGSGDPQ R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-29 | 55 | 146 | 2 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027771117.1 | 0.0 | nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9SMP0 | 3e-42 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A3Q7FNU8 | 1e-127 | A0A3Q7FNU8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g111460.1.1 | 1e-128 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15807 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 7e-35 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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