PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g030560.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YC

Protein Properties

Length: 1150aa MW: 130908 Da PI: 7.9385

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g030560.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	133.2	7.8e-42	942	1045	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 q++ fw+ q ie++ dfk+h++P++rik+i+k++++ ++sae+P+l+skacelf+leltlrsw ha++n+r +lkk+d aaa+ rt++ Sopen03g030560.1 942 QMRIFWNCQreeIEEMDDFKHHQFPISRIKRIIKSENNAIKLSAETPILFSKACELFVLELTLRSWFHAQQNNRGALKKTDFAAAIRRTEV 1032 79***997779999*********************************************************************** PP NF-YC 89 fdflvdivprdel 101 fdfl d+vp+de+ Sopen03g030560.1 1033 FDFLADVVPEDEI 1045 ********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF53098	3.29E-5	3	71	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF56672	2.22E-16	361	582	No hit	No description
Pfam	PF07727	2.6E-83	362	603	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamily	SSF56672	2.22E-16	620	757	No hit	No description
CDD	cd09272	5.63E-51	696	841	No hit	No description
SuperFamily	SSF47113	5.94E-22	951	1051	IPR009072	Histone-fold
Pfam	PF00808	3.9E-11	964	1027	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.1E-25	965	1042	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1150 aa Download sequence Send to blast
MSTGITVEHP VAHVHTQNGL AESLIKRLQL IARPLLMRTK LSVSMWGHAI LHAAALVRIR 60 PTNYHEFSPL QLTFGQEPNI SHLRIFGCAV YVPIAPPQRT KMGPQRRLGI YVGYESPSII 120 KYLEPMTGDL FKARFADCHF DESVYPTLGG EHKSLGKEID WNSSSLSHSD PRTNQCEQEV 180 QRIIYLQNTA NQLPDAFTNL PRITKSHIPA VNAPVRVDIP TEQIVKANES RPHLKRGRPI 240 GSKDKNPRKR KGINDQDNHG LKEISQDETQ VITHDDEEVR TSENNEISMN YVSTRKLWNR 300 NNVVIDNIFA YNVAIEIMQQ DEDFEPKSVH ECRQRNDWPK WKDAIQAELA SLEKREVFGP 360 IIRTPEGIKP VGYKWVFVRK RNEKGEVMRY KARLVAQGFS QRPGIDYMET YSPVVDAITF 420 RYLINLAVHE KLEMRLMDVV TAYLYGSLDH NIFMKIPEAF KVPEAYKDSR ETCSIKLQKS 480 LYGLKQSGRM WYNRLSEYLL KKGYKNDPIC PCIFIKRSGS EFVIIAVYVD DLNIIGTRKE 540 LLEAVECLKK EFEMKDLGKT KFCLGLQIEN LSNGILVHQS TYTEKILKRF YMDNSHPLST 600 PMVVRSLDIN TDPFRPQEND EELLGDETPY LSAIGALMYL ANNTRPDICF AVSLLARFSS 660 SPTKRHWNGV KHILRYLRGT MDMGLFYSNE SKSELIGYAD AGYLSDPHKA RSQTGYLFTC 720 GDTAISWRSM KQTLVATSSN HAEIIAIHEA SRECVWLRSM THHIQEMCGF SLKKNIPTTM 780 YEDNAACIAQ LKGGYIKGDR TKHISPKFFF THDLQQNGEI EVQQIRSSDN LADLFTKALP 840 TSTFEKLRYK IGMRRLRDIN LCLQLLHWKI RSSTKKIMEN NDQQPMEINQ QQPMENNDQQ 900 PMENNQQQPV EPLYPVYPFY QMLLHQQHQQ LQLQKQQQVE EQMRIFWNCQ REEIEEMDDF 960 KHHQFPISRI KRIIKSENNA IKLSAETPIL FSKACELFVL ELTLRSWFHA QQNNRGALKK 1020 TDFAAAIRRT EVFDFLADVV PEDEINEVAT GFGPGMVGPT VGGGFPYFYP PMGQLAMPGV 1080 MPGGPAMLGP MPGGPAMPGP MIGGPSMPGP MIGGPAVAVV APSVYVQPPL QAWQPAGDNP 1140 NAGGENDGQG

Sequence ? help Back to Top

Protein Sequence Length: 1150 aa Download sequence Send to blast

MSTGITVEHP VAHVHTQNGL AESLIKRLQL IARPLLMRTK LSVSMWGHAI LHAAALVRIR  60
PTNYHEFSPL QLTFGQEPNI SHLRIFGCAV YVPIAPPQRT KMGPQRRLGI YVGYESPSII  120
KYLEPMTGDL FKARFADCHF DESVYPTLGG EHKSLGKEID WNSSSLSHSD PRTNQCEQEV  180
QRIIYLQNTA NQLPDAFTNL PRITKSHIPA VNAPVRVDIP TEQIVKANES RPHLKRGRPI  240
GSKDKNPRKR KGINDQDNHG LKEISQDETQ VITHDDEEVR TSENNEISMN YVSTRKLWNR  300
NNVVIDNIFA YNVAIEIMQQ DEDFEPKSVH ECRQRNDWPK WKDAIQAELA SLEKREVFGP  360
IIRTPEGIKP VGYKWVFVRK RNEKGEVMRY KARLVAQGFS QRPGIDYMET YSPVVDAITF  420
RYLINLAVHE KLEMRLMDVV TAYLYGSLDH NIFMKIPEAF KVPEAYKDSR ETCSIKLQKS  480
LYGLKQSGRM WYNRLSEYLL KKGYKNDPIC PCIFIKRSGS EFVIIAVYVD DLNIIGTRKE  540
LLEAVECLKK EFEMKDLGKT KFCLGLQIEN LSNGILVHQS TYTEKILKRF YMDNSHPLST  600
PMVVRSLDIN TDPFRPQEND EELLGDETPY LSAIGALMYL ANNTRPDICF AVSLLARFSS  660
SPTKRHWNGV KHILRYLRGT MDMGLFYSNE SKSELIGYAD AGYLSDPHKA RSQTGYLFTC  720
GDTAISWRSM KQTLVATSSN HAEIIAIHEA SRECVWLRSM THHIQEMCGF SLKKNIPTTM  780
YEDNAACIAQ LKGGYIKGDR TKHISPKFFF THDLQQNGEI EVQQIRSSDN LADLFTKALP  840
TSTFEKLRYK IGMRRLRDIN LCLQLLHWKI RSSTKKIMEN NDQQPMEINQ QQPMENNDQQ  900
PMENNQQQPV EPLYPVYPFY QMLLHQQHQQ LQLQKQQQVE EQMRIFWNCQ REEIEEMDDF  960
KHHQFPISRI KRIIKSENNA IKLSAETPIL FSKACELFVL ELTLRSWFHA QQNNRGALKK  1020
TDFAAAIRRT EVFDFLADVV PEDEINEVAT GFGPGMVGPT VGGGFPYFYP PMGQLAMPGV  1080
MPGGPAMLGP MPGGPAMPGP MIGGPSMPGP MIGGPAVAVV APSVYVQPPL QAWQPAGDNP  1140
NAGGENDGQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-31	950	1041	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	250	KNPRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880999.1	0.0	LOW QUALITY PROTEIN: uncharacterized protein LOC107277933
TrEMBL	A0A1U9WYB0	0.0	A0A1U9WYB0_9GENT; Pol
STRING	XP_004295873.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-40	nuclear factor Y, subunit C1