PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g030540.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 342aa    MW: 38750.2 Da    PI: 8.2544
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g030540.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-14361141498
                       T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       + l+lp +fa++   ++   +k   ++d sg +W v++  + ++g   +++GW eF++ ++L +gD +vF++++r+ f  +v++f+
  Sopen03g030540.1  36 QVLILPPNFARSAsHLV---DKVTLVKDASGLQWPVTV--CDYQGLLAIQQGWPEFASNHDLVVGDHLVFHYTQRQHF--TVQIFD 114
                       4589******9995333...33456699**********..****99**************************999999..999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-1720117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-1921117IPR015300DNA-binding pseudobarrel domain
CDDcd100173.31E-1423114No hitNo description
SMARTSM010192.9E-825116IPR003340B3 DNA binding domain
PfamPF023623.5E-1227114IPR003340B3 DNA binding domain
PROSITE profilePS5086311.70238116IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-6268334IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-5271336IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.768275342IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MESANVACEC KKDCLLIHRK RVPSFYKAMT DKSCFQVLIL PPNFARSASH LVDKVTLVKD  60
ASGLQWPVTV CDYQGLLAIQ QGWPEFASNH DLVVGDHLVF HYTQRQHFTV QIFDMNGYEK  120
IIFCCDTGKG KKRAATRVEE TTRVGDAQFD QDGRLCLHQS RFEMPASKPP AEGLLPLRED  180
GIKATGMVSR PAEDILLLGP RDKKCKKASQ FDSGEEEANG NGKVNKSESA GLGDTPSFPA  240
NHYSSLVEVY GPDFLELPGS WRDLLQRPTR ERWIIFLRGQ DKRIWPTYYT SLLPPYYSRR  300
PSVDVLSRGW KEVAAAYGMN AKDHCLFELA DKQNRIFDIR KI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771644.10.0uncharacterized protein LOC107014749
RefseqXP_027771645.10.0uncharacterized protein LOC107014749
RefseqXP_027771646.10.0uncharacterized protein LOC107014749
TrEMBLA0A3Q7FNT90.0A0A3Q7FNT9_SOLLC; Uncharacterized protein
STRINGSolyc03g111410.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2081933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-09B3 family protein