PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g030040.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 299aa    MW: 34321.3 Da    PI: 5.4489
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g030040.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC119.51.5e-3721122299
             NF-YC   2 lksfwekq...iekatdfknh.elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       l++fw++q   +e+ +dfk++  lP +rikki+k++edv+m++ e+Pvll+kacelfi +ltlrs lha+en+rr lkk d+++++ +td fd
  Sopen03g030040.1  21 LEMFWKSQqnqMENIKDFKDRlLLPPTRIKKIMKKNEDVRMVAGESPVLLAKACELFIQDLTLRSSLHAQENHRRILKKDDLTDVIVQTDYFD 113
                       789**977677999*****66268********************************************************************* PP

             NF-YC  91 flvdivprd 99 
                       fl+d+  r+
  Sopen03g030040.1 114 FLLDVFHRN 122
                       ****98775 PP
2NF-YC119.51.5e-37169268297
             NF-YC   2 lksfwekq...iekatdfknhelP.larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       l++fw+++   +e++tdfk + lP + rikki+k+d+dv+mi++e+Pvll+kacelfi eltlrsw +aeen+rr lkk d+++++ +td+ d
  Sopen03g030040.1 169 LEMFWTDKlreMENVTDFKSNLLPrINRIKKIMKTDKDVRMIATESPVLLAKACELFIQELTLRSWFKAEENHRRILKKDDVTDVIMETDTLD 261
                       899**998888************9899****************************************************************** PP

             NF-YC  91 flvdivp 97 
                       fl+d+  
  Sopen03g030040.1 262 FLLDDDV 268
                       ***9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.54E-2128115IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.2E-2544119IPR009072Histone-fold
PfamPF008084.3E-1644103IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.84E-21134263IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.0E-24194265IPR009072Histone-fold
PfamPF008086.8E-16194251IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKNNSEKSIV NAAQSTGYPT LEMFWKSQQN QMENIKDFKD RLLLPPTRIK KIMKKNEDVR  60
MVAGESPVLL AKACELFIQD LTLRSSLHAQ ENHRRILKKD DLTDVIVQTD YFDFLLDVFH  120
RNGATDPVTP NFVPLYAAGG SNEEDVNAGQ SAAYPMLSPP HLEKKQEKLE MFWTDKLREM  180
ENVTDFKSNL LPRINRIKKI MKTDKDVRMI ATESPVLLAK ACELFIQELT LRSWFKAEEN  240
HRRILKKDDV TDVIMETDTL DFLLDDDVNV TDGSTPNVVP FHVAEGTMGV HTDNLDHQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-2827265295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771311.11e-104nuclear transcription factor Y subunit C-1-like
SwissprotQ8LCG75e-36NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A3Q7FP426e-93A0A3Q7FP42_SOLLC; Nuclear transcription factor Y subunit C
STRINGSolyc03g110840.1.12e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.24e-35nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]