PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g030030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 144aa MW: 16862.8 Da PI: 4.7118 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 106.4 | 1.7e-33 | 35 | 134 | 2 | 97 |
NF-YC 2 lksfwekq...iekatdfknhel.PlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 +++fw++q +ek +fkn+ l rik+i+k+++dv++i++e+Pvll+kac++fi eltlrswl+a+en rr lkk d+++++ r+d + Sopen03g030030.1 35 MEMFWTDQereMEKIDNFKNNLLvSPNRIKNIMKMNKDVRRITSESPVLLAKACDFFIQELTLRSWLNAQENYRRILKKDDVTDVIMRSDNLN 127 789***99999********88762568****************************************************************** PP NF-YC 91 flvdivp 97 fl d+ Sopen03g030030.1 128 FLFDDDV 134 ***9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.62E-18 | 53 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-13 | 61 | 117 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 5.7E-21 | 61 | 131 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MENNSEKSTV NSTQSVDAYS TTSHLNIEKI EQEYMEMFWT DQEREMEKID NFKNNLLVSP 60 NRIKNIMKMN KDVRRITSES PVLLAKACDF FIQELTLRSW LNAQENYRRI LKKDDVTDVI 120 MRSDNLNFLF DDDVNSTGGN NGHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-24 | 42 | 131 | 3 | 91 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069626.2 | 1e-103 | nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q9FMV5 | 3e-31 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A494G9T4 | 5e-96 | A0A494G9T4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc00g107050.1.1 | 8e-97 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12872 | 5 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 3e-30 | nuclear factor Y, subunit C4 |