PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen03g030000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 151aa MW: 17228.6 Da PI: 5.7099 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 121.9 | 2.7e-38 | 21 | 122 | 2 | 99 |
NF-YC 2 lksfwekq...iekatdfknh.elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 l++fw++q +e+ +dfk++ lP +rikk++k++edv+m++ e+Pvll+kacelfi +ltlrs lha+en+rr lkk d+++++ +td fd Sopen03g030000.1 21 LEMFWKSQqnqMENIKDFKDRlLLPPTRIKKMMKKNEDVRMVAGESPVLLAKACELFIQDLTLRSSLHAQENHRRILKKDDLTDVIVQTDYFD 113 789**977677999*****66268********************************************************************* PP NF-YC 91 flvdivprd 99 fl+d+v r+ Sopen03g030000.1 114 FLLDVVHRN 122 ******986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.0E-21 | 40 | 123 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.0E-26 | 44 | 120 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.8E-16 | 44 | 103 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 151 aa Download sequence Send to blast |
MKNNSEKSIV NAAQSTGYPT LEMFWKSQQN QMENIKDFKD RLLLPPTRIK KMMKKNEDVR 60 MVAGESPVLL AKACELFIQD LTLRSSLHAQ ENHRRILKKD DLTDVIVQTD YFDFLLDVVH 120 RNGATDPFAP NFVPLYAAGG SNEEDGNNLD Q |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-28 | 27 | 121 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027771215.1 | 1e-111 | nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9FMV5 | 3e-35 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | M1DJJ7 | 1e-87 | M1DJJ7_SOLTU; Uncharacterized protein | ||||
STRING | Solyc03g110840.1.1 | 1e-107 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12872 | 5 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63470.2 | 1e-37 | nuclear factor Y, subunit C4 |