PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g028900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 709aa MW: 78321.7 Da PI: 6.7006 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 18 | 73 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++ Le+ F+++++p++++r +L++ l L rq+k+WFqNrR+++k Sopen03g028900.1 18 KKRYHRHTANQIQKLEAIFKECPHPDEKTRLQLSRDLALAPRQIKFWFQNRRTQMK 73 678899***********************************************998 PP | |||||||
2 | START | 184.7 | 5e-58 | 216 | 441 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 +a a++el+++++ +ep+W+ks + +n+d + + f+++++ ++ea+r+sgvv+m+ lve ++d + +W e ++ ka Sopen03g028900.1 216 IAGNAMEELIRLVQTSEPLWMKSTidgrDVLNSDSYDRVFPRANShlknpnVRIEASRDSGVVTMNGLALVEVFMDAN-KWHEFFPtivsKAR 307 67899*******************9999999999999999998889****99**************************.************** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166 tlevissg ++lqlm+ elq+lsplvp R +f+R+++q ++g+w+ivdvS d +q+++ ss ++++lpSg+li++++ng+skvtw Sopen03g028900.1 308 TLEVISSGvmgsrtSTLQLMYEELQVLSPLVPtRQLYFLRFCQQIEQGSWAIVDVSYDITQENQFSSTACKVHRLPSGCLIQDMPNGYSKVTW 400 ***************************************************************98**************************** PP EE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 vehv+++++ h l+r l++sgla+ga +wv tlqr ce+ Sopen03g028900.1 401 VEHVEVEEKGLiHRLYRDLIHSGLAFGAERWVGTLQRVCER 441 ******987555***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.25E-18 | 10 | 78 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-21 | 12 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.022 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.2E-17 | 16 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.14E-16 | 17 | 76 | No hit | No description |
Pfam | PF00046 | 3.8E-16 | 18 | 73 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 48.813 | 206 | 444 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.39E-36 | 207 | 442 | No hit | No description |
CDD | cd08875 | 5.81E-119 | 210 | 440 | No hit | No description |
SMART | SM00234 | 9.0E-50 | 215 | 441 | IPR002913 | START domain |
Pfam | PF01852 | 5.8E-50 | 216 | 441 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.95E-21 | 462 | 699 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MDGGGADPHD GSDSHRRKKR YHRHTANQIQ KLEAIFKECP HPDEKTRLQL SRDLALAPRQ 60 IKFWFQNRRT QMKAQHERAD NCALRAENDK IRCENIAIRE ALKNVICPSC GGPPVTEDSY 120 FDEQKLRIEN MQLKEELDKV SSIAAKYIGR PISQLPPVQP IHLSSLDLSM SSFIGHGPNS 180 LDLDLDLLPG SSSNMPSLAY ATLNLSDMDK SLMADIAGNA MEELIRLVQT SEPLWMKSTI 240 DGRDVLNSDS YDRVFPRANS HLKNPNVRIE ASRDSGVVTM NGLALVEVFM DANKWHEFFP 300 TIVSKARTLE VISSGVMGSR TSTLQLMYEE LQVLSPLVPT RQLYFLRFCQ QIEQGSWAIV 360 DVSYDITQEN QFSSTACKVH RLPSGCLIQD MPNGYSKVTW VEHVEVEEKG LIHRLYRDLI 420 HSGLAFGAER WVGTLQRVCE RHACLMVNSN PSHDHGGAIP SPDGKRSMMK LARRMVSNFC 480 ASVNPSNGHQ WNTISGLNEF EVRATLQKCT DPGQPNGVVI SAAATIWLPI PPQQVFNFFR 540 DERTRPQWDV LSNQNPVQEV AHIANGSHSG NCISVLRAYN TSQNNMLILQ ESCIDSSGAL 600 VVYSPVDIPA INIAMSGEDP TYIPLLPSGF TISPDGRQLD TDAASCSSSS NASTIGGGRS 660 GGSLITVVFQ ILVSSLPSAK MSPESVNTVN NLIGSTVHQI KSALNCSTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068940.2 | 0.0 | homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A2G2X830 | 0.0 | A0A2G2X830_CAPBA; Homeobox-leucine zipper protein HDG12 | ||||
STRING | Solyc03g098200.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2490 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |