PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g024770.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 253aa    MW: 28966.1 Da    PI: 9.0135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g024770.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.9e-142067148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd++l  ++ ++G  +W+  ++  g+ Rt+k+c++rw +yl
  Sopen03g024770.1 20 KGAWSPEEDQKLRGYIMKYGIWNWRQMPKFAGLSRTGKSCRLRWMNYL 67
                      79******************99************************97 PP
2Myb_DNA-binding46.21e-1473118148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++TteE e+ ++  ++lG+  W++Ia++++ gRt++++k++++++l
  Sopen03g024770.1  73 RGPFTTEEVEIVIKTYQELGNS-WSAIAAKLP-GRTDNEVKNFFHTHL 118
                       89******************99.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5211567IPR017930Myb domain
SMARTSM007171.7E-111969IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-2819114IPR009057Homeodomain-like
PfamPF002497.7E-132067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-222174IPR009057Homeodomain-like
CDDcd001671.35E-92267No hitNo description
PROSITE profilePS5129421.68568122IPR017930Myb domain
SMARTSM007173.2E-1372120IPR001005SANT/Myb domain
PfamPF002499.9E-1373118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-2475122IPR009057Homeodomain-like
CDDcd001673.86E-975118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MPRVQQQQQK GTSMEAIIKK GAWSPEEDQK LRGYIMKYGI WNWRQMPKFA GLSRTGKSCR  60
LRWMNYLRPD VKRGPFTTEE VEIVIKTYQE LGNSWSAIAA KLPGRTDNEV KNFFHTHLKK  120
HLGLKNHDVP LKTSKIRKQT KEDEKKISTR GRLVLEMSNN SNSLTTDVCS PCSSITTCEE  180
NQMMDPFVNF SQTFEVCYNN ITSLVVDQQV PNMENTCINI GVALPHSIPH GSAVNSFDQF  240
DMTSFWIDVL GNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-23412011126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068506.10.0transcription factor MYB15-like
SwissprotQ9LTC42e-47MYB15_ARATH; Transcription factor MYB15
TrEMBLA0A3Q7FLR40.0A0A3Q7FLR4_SOLLC; Uncharacterized protein
STRINGSolyc03g093890.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-49myb domain protein 15
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]