PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g024350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 153aa MW: 17384.8 Da PI: 10.3302 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.3e-18 | 75 | 125 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ r++lg++ t +Aa+a++ a+ kl+g Sopen03g024350.1 75 QYRGVRRRP-WGKYAAEIRDPTRK--GSRVWLGTYETDVDAARAYDCAAFKLRG 125 7********.**********8542..4**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 74 | 133 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.26E-29 | 74 | 133 | No hit | No description |
Pfam | PF00847 | 2.2E-12 | 75 | 125 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-23 | 75 | 134 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-35 | 75 | 139 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.671 | 75 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-13 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-13 | 115 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MINKEEEKLM LQLIREHLLG DSFIHYDPLP LFISHHKPNN FILNPTTSSV ESTPDRKFSG 60 SGNGSSPADE GTKKQYRGVR RRPWGKYAAE IRDPTRKGSR VWLGTYETDV DAARAYDCAA 120 FKLRGRKAIL NFPFDAGNLV PPVTIGRKRR IDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-26 | 74 | 134 | 4 | 64 | ATERF1 |
3gcc_A | 3e-26 | 74 | 134 | 4 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069273.1 | 1e-111 | ethylene-responsive transcription factor ERF106-like | ||||
Swissprot | Q9LY05 | 1e-39 | EF106_ARATH; Ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | A0A1J6KBH1 | 2e-59 | A0A1J6KBH1_NICAT; Ethylene-responsive transcription factor erf106 | ||||
TrEMBL | A0A3Q7FNR7 | 2e-60 | A0A3Q7FNR7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g093530.1.1 | 3e-64 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 2e-41 | ERF family protein |
Publications ? help Back to Top | |||
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