PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen03g022550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 246aa MW: 28145.8 Da PI: 6.3914 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74.4 | 1.4e-23 | 164 | 222 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYG K +s+f +sYYrC a +Cp+++++++s++dp+ v++tY+g+Hnh+ Sopen03g022550.1 164 ADQWRWRKYGMKRTGDSTFLKSYYRCNEAnDCPARRHIQKSSTDPNKVIVTYRGQHNHP 222 59*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-23 | 158 | 223 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.504 | 158 | 224 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-20 | 162 | 223 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-22 | 163 | 223 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.2E-20 | 165 | 222 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MAENENENEN DWDLWAVVRS CGKRNNSVHD DMNVNNTSVF VDHSVHEDPT HGNSVNNTHQ 60 EETDGVGDFT DSFVTEHKHY FGLDEVISLS KNLNTNSRIE PHNQENQTET IPNTPLVVVE 120 HEEKKKKKVR FSMQISSTEA GKTFSYRGKS TERYEILAEK LSEADQWRWR KYGMKRTGDS 180 TFLKSYYRCN EANDCPARRH IQKSSTDPNK VIVTYRGQHN HPHIAMVHGS PNAAAPLEDP 240 SFPSST |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068854.1 | 0.0 | WRKY transcription factor 22-like | ||||
TrEMBL | M1DVX5 | 1e-153 | M1DVX5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400095271 | 1e-154 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11091 | 13 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58710.2 | 7e-17 | WRKY DNA-binding protein 69 |