PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g022510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 183aa MW: 20873.1 Da PI: 7.2735 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 49.4 | 9.3e-16 | 125 | 179 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++W+K G + + ++YY C +Cp+k+++e+s++dp+ v++tY+g+Hnh+ Sopen03g022510.1 125 ADQWRWKKHGSNQ----TGRKNYYTCNEVeDCPAKRHIEQSSKDPNRVIVTYRGQHNHP 179 69********765....55679****9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.1E-17 | 118 | 181 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.119 | 119 | 181 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-15 | 122 | 181 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-8 | 124 | 180 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-12 | 126 | 179 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MADNENNSAL VNHGVHEGGG SVNKDTSLFQ EESKTVVDFR DAFAVEKKRY FGLDEVISLA 60 NNLNTTNSRT ENQSETIPNT PLMVLEHEEK KKGRYSMLSS STDQFAIRGK KLETHELSVE 120 ELLKADQWRW KKHGSNQTGR KNYYTCNEVE DCPAKRHIEQ SSKDPNRVIV TYRGQHNHPP 180 PKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165592.1 | 3e-92 | PREDICTED: probable WRKY transcription factor 33 | ||||
TrEMBL | M1D8B8 | 6e-91 | M1D8B8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400084905 | 1e-91 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11091 | 13 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 4e-13 | WRKY DNA-binding protein 35 |