PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g022490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 245aa MW: 27929.8 Da PI: 7.7374 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 47.6 | 3.3e-15 | 161 | 214 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++W+K G + + ++YY C +Cp+k+++e+s++dp+ v++tY+g+Hnh+ Sopen03g022490.1 161 DQWRWKKHGSNQ----TGRKNYYTCNEVdDCPAKRHIEQSSKDPTKVIVTYRGQHNHP 214 99*******765....55679*****998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 17.316 | 154 | 216 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-15 | 156 | 216 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.6E-8 | 159 | 215 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-14 | 160 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.7E-12 | 161 | 214 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MAENENDWDL GAIVRSCSKM NNSVRAIVDH GVHEDDNSAL VDNSVHGDGN SVNTSLFQEE 60 RNSVGDFREA FAVEKKRYFG LDEVISLANN LNTNSRIENR TETISNTPLV NVEHEEEKKK 120 KKKKARYSMQ SSTTESGNLF IYRGKIHERH EILAEELSKV DQWRWKKHGS NQTGRKNYYT 180 CNEVDDCPAK RHIEQSSKDP TKVIVTYRGQ HNHPPPQQNI PVVHRRPNAA APRENPSSYS 240 STSTL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 123 | KKKKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068853.1 | 0.0 | probable WRKY transcription factor 4 | ||||
TrEMBL | M1DX32 | 1e-104 | M1DX32_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400095805 | 1e-105 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11091 | 13 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 2e-08 | WRKY DNA-binding protein 11 |