PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g022310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 201aa    MW: 23712.4 Da    PI: 5.2715
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g022310.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72.1e-182474656
                      S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      +ft+eq++ Le++F+   ++  +e+ +LA++lgL+ rqV +WFqN+Ra++k
  Sopen03g022310.1 24 RFTDEQVKLLESMFKLGTKIEPREKLKLARELGLQPRQVAIWFQNKRARWK 74
                      7*************************************************9 PP

2HD-ZIP_I/II115.33.8e-3722112393
       HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                        +r+++eqvklLE++F+  +k+ep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+ L++++d+l+++ e+L++e+e+L  +l++
  Sopen03g022310.1  22 AKRFTDEQVKLLESMFKLGTKIEPREKLKLARELGLQPRQVAIWFQNKRARWKSKQLEHEYRILQSKFDNLNTQFESLKTEKERLLIQLET 112
                       69***********************************************************************************988875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.21E-181078IPR009057Homeodomain-like
PROSITE profilePS5007116.5031676IPR001356Homeobox domain
SMARTSM003896.6E-171880IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-192383IPR009057Homeodomain-like
PfamPF000468.1E-162474IPR001356Homeobox domain
CDDcd000866.88E-142477No hitNo description
PRINTSPR000317.1E-64756IPR000047Helix-turn-helix motif
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
PRINTSPR000317.1E-65672IPR000047Helix-turn-helix motif
PfamPF021834.9E-1376117IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEPQLDNSEI SNFKKKNKCE NAKRFTDEQV KLLESMFKLG TKIEPREKLK LARELGLQPR  60
QVAIWFQNKR ARWKSKQLEH EYRILQSKFD NLNTQFESLK TEKERLLIQL ETLNDQLENN  120
NARGSGSQDS RDSEMKDCSG SRFDHKSVNE EDDDTREGRD KYFTPKEEAE FWNLEELGDS  180
NSLEHWCVGL GSISNSKLWD F
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070229.11e-145homeobox-leucine zipper protein ATHB-7-like
SwissprotP468973e-38ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A3Q7G9N91e-136A0A3Q7G9N9_SOLLC; Uncharacterized protein
STRINGSolyc03g082550.2.11e-137(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-40homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]