PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g020850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 275aa MW: 31048.6 Da PI: 4.3232 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 49.1 | 1.9e-15 | 2 | 54 | 75 | 128 |
NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 nr+++ g+Wk tg+d++vl +++ vg ktLvf++g+ap+ ++tdW +heyr+ Sopen03g020850.1 2 NRTIEIGFWKITGRDRRVLY-DEKFVGSVKTLVFHQGKAPRVQRTDWAIHEYRF 54 89999***************.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.44 | 1 | 77 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.93E-20 | 2 | 77 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-5 | 3 | 53 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MNRTIEIGFW KITGRDRRVL YDEKFVGSVK TLVFHQGKAP RVQRTDWAIH EYRFEDKNME 60 DAGFSLDAYV LSKVFKKSGP GPKNVAQYGA PFKEEDWEDN ETPAEHNQSS IPSLPLPDNE 120 TCSIVTQPYI HEMPAEPNSY GATSIPAMPD NLSCSVITTM VDRGNKYLWH LTEPGPSSAE 180 LYSKKMPQEK DDYMIQLFEN FIEDPAILFA GNEDNLGTND MNVEVASFIN GNVMHSNLGN 240 LDNCVELDQT TVDLSVFQGT DYSHDSIFFQ DVPSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-12 | 2 | 83 | 90 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-12 | 2 | 83 | 90 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-12 | 2 | 83 | 90 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-12 | 2 | 83 | 90 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-12 | 2 | 83 | 93 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-12 | 2 | 83 | 93 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-12 | 2 | 83 | 93 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-12 | 2 | 83 | 93 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-12 | 2 | 83 | 93 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-12 | 2 | 83 | 93 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-12 | 2 | 83 | 93 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-12 | 2 | 83 | 93 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-12 | 2 | 83 | 90 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-12 | 2 | 83 | 90 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235079.1 | 0.0 | NAC domain-containing protein 82-like | ||||
TrEMBL | A0A3Q7G8W9 | 0.0 | A0A3Q7G8W9_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400073779 | 4e-65 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6050 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 2e-38 | NAC domain containing protein 82 |