PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g016810.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 489aa    MW: 54227.7 Da    PI: 7.2934
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g016810.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31214270259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +DgynWrKYGqK+vk se prsYY+Ct+ +C vkkkvers  d++++eitY+g+Hnhe
  Sopen03g016810.1 214 SDGYNWRKYGQKMVKASERPRSYYKCTHLKCLVKKKVERSI-DGHITEITYKGHHNHE 270
                       7****************************************.***************7 PP
2WRKY1054e-33387445159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver++ dpk+v++tYeg+Hnh+
  Sopen03g016810.1 387 LDDGFKWRKYGQKVVKGNHHPRSYYRCTYPGCNVRKHVERASADPKAVITTYEGKHNHD 445
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-27208272IPR003657WRKY domain
PROSITE profilePS5081123.055208272IPR003657WRKY domain
SuperFamilySSF1182901.19E-24212272IPR003657WRKY domain
SMARTSM007741.6E-33213271IPR003657WRKY domain
PfamPF031061.1E-22215270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-36373447IPR003657WRKY domain
SuperFamilySSF1182902.75E-29379447IPR003657WRKY domain
PROSITE profilePS5081135.599382447IPR003657WRKY domain
SMARTSM007741.2E-39387446IPR003657WRKY domain
PfamPF031067.8E-26388445IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MGENFKAPSV SVSSLSTLTI PPKDSFFGGG NMPYFSPGPM TLVSTFFSES EYPSFSQLLA  60
GAMASPLAKP PTLLPGEEEN CKQGYKQNRP MNLMVAQSPF FTIPTAFTPS GLLNSPGFLS  120
ALQSPFGMSH QQALAHVTAQ AALSQSYLQT QAECHFPLQS KSVQVLGASD PEESSLQPQL  180
DTMSSDQKSK KFELPQLSQS EDKPSFNSVD RPASDGYNWR KYGQKMVKAS ERPRSYYKCT  240
HLKCLVKKKV ERSIDGHITE ITYKGHHNHE LPQPNKRRRD GCAQDGSDCS NINPETGTHT  300
EIEINGLNGA LVAHSEQVST EMACERSVSN ECEEIEDAET AASKEHDDAT NVKRMKTTVE  360
TPILSSSHKA EPESKIVVQT RNEVDILDDG FKWRKYGQKV VKGNHHPRSY YRCTYPGCNV  420
RKHVERASAD PKAVITTYEG KHNHDIPIAR NRSHSTAQNS SRQLNEQEIA TWRPAILDKV  480
ALHTSEIQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36215447877Probable WRKY transcription factor 4
2lex_A1e-36215447877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111260.0AB711126.1 Solanum tuberosum StWRKY14 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070047.10.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI901e-121WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A3Q7FR360.0A0A3Q7FR36_SOLLC; Uncharacterized protein
STRINGSolyc03g104810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-120WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]