PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g015050.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 283aa    MW: 33242.6 Da    PI: 4.635
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g015050.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.42.8e-1951303128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       +G+rFhPtd el+ + L++  +g+  l+ ++ i+ +diy    Pw++ ++ + eek  yf ++ +k++ ++kr  r+ ++g+Wk +  +  + 
  Sopen03g015050.1   5 MGIRFHPTDTELI-NNLNRFFKGELcLNQQSPIQFADIYGDqPPWEIFEANSCEEKFRYFITPLKKRKIKDKRFCRTCAKGTWKGQTAEDLIR 96 
                       7************.669999999995445456*******87368***64444456667**************************999999998 PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++  g +vg k+ + f   ++  g++ +W+m eyr+
  Sopen03g015050.1  97 RNgMGPVVGFKRNFRFE--TSMCGQNKTWLMIEYRV 130
                       8756677*********8..7889999********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.7723154IPR003441NAC domain
SuperFamilySSF1019412.35E-225154IPR003441NAC domain
PfamPF023654.3E-135130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSKQMGIRFH PTDTELINNL NRFFKGELCL NQQSPIQFAD IYGDQPPWEI FEANSCEEKF  60
RYFITPLKKR KIKDKRFCRT CAKGTWKGQT AEDLIRRNGM GPVVGFKRNF RFETSMCGQN  120
KTWLMIEYRV ADNFFKENNH IVKKDFVVCR IKKKKNVYHH VMDAEDGDAV GIIDPMLLLE  180
PNHNNGYSTT ELDQVTVCEA TTSEYDVQNS STMENRQTTL EIEECDRVDD IISEEDMFRM  240
LEDILDVDIP DRVDDIRSAE DMYRMFEDIV VDIPDDWLEH SLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067530.10.0NAC domain containing protein 52-like
TrEMBLA0A3Q7FKY81e-171A0A3Q7FKY8_SOLLC; Uncharacterized protein
STRINGSolyc03g062670.1.11e-172(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.11e-16NAC domain containing protein 52