PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g012740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 150aa MW: 17116.6 Da PI: 8.9224 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 38.8 | 2.1e-12 | 30 | 82 | 1 | 49 |
NF-YC 1 qlksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllsk 49 q+k+fw+++ +e+ +++k n lP +rikki k+ded++mi e+ vll+k Sopen03g012740.1 30 QVKMFWTDKrreMENINNLKnNLLLPPTRIKKITKKDEDIRMIVVESSVLLTK 82 789***9887889*******45578*************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.3E-7 | 49 | 82 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.93E-5 | 49 | 116 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MENNSEQSTV NAGQLVGVRQ LNIEKNKQEQ VKMFWTDKRR EMENINNLKN NLLLPPTRIK 60 KITKKDEDIR MIVVESSVLL TKKDDISDVI MKIDKLDFLI DDNDNSGDGS TPSVVPFYST 120 RGSNGQDGNI FIIKVFSSRL VVPLISKQQY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-135 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351565.1 | 7e-46 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
TrEMBL | M1B8B7 | 2e-44 | M1B8B7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400039471 | 3e-45 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12872 | 5 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 2e-09 | nuclear factor Y, subunit C4 |