PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g012280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 329aa MW: 37397 Da PI: 5.1394 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 105.2 | 1e-32 | 90 | 190 | 1 | 94 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 a+g+kdrhsk++T++g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l + +++ +s ++++ + s ++++s+ Sopen03g012280.1 90 ATGRKDRHSKVSTAKGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALGEFPNNFHSTKlNPKKMQYSFDQEQSPefsq 182 589***********************************************************9994444433345555555555444444433 PP TCP 89 ..kaaksa 94 + +++ Sopen03g012280.1 183 enRGVPNS 190 32333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.4E-31 | 91 | 185 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.013 | 93 | 151 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MNHQFQVSDE EDGSEEEEEE EEEVFQENDI GNLQSHYQNQ QMPQSLCKKP EKWANFTVSE 60 QELNKGTRRM KPKRAKTDVI EGHGGRIIRA TGRKDRHSKV STAKGPKDRR VRLSPNTAIQ 120 FYDVQDRLGY DRPSKAIDWL IKEAKAAIDA LGEFPNNFHS TKLNPKKMQY SFDQEQSPEF 180 SQENRGVPNS ECGVQDKQQE VNYDIPNLFS SSDGLKIPFL SDLQSYPHGH FLNFQSLQDD 240 TILSSGNHHQ GSFFTTTSVN HFPSVLSQNQ VFSHREPLQS SFFPLMSDPL STQLETLSYG 300 FSNDGFTGII SSASRIQGEE EQATFFTAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-20 | 98 | 151 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 9e-20 | 98 | 151 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 73 | RRMKPKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069120.1 | 0.0 | transcription factor TCP10-like | ||||
TrEMBL | K4B8V2 | 0.0 | K4B8V2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g077250.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4112 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 9e-37 | TCP domain protein 10 |