PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g009480.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 579aa MW: 66592.9 Da PI: 9.9844

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g009480.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.1	2.6e-33	376	491	3	133
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 +++++ ski T++g+RdRR+Rls++ a++fFdLq+ LGfdk+skti+WL++ ++ a elt+ s+ + + ++++ a +++ Sopen03g009480.1 376 KRERSCSKILTAQGPRDRRIRLSINMARKFFDLQELLGFDKPSKTIDWLFTHSEVALEELTNWSTHQT------------HRPKISGAINNKG 456 577889*******************************************************55555............2223333333333 PP TCP 96 kskksqksaasalnlakesrakarararertrekmrik 133 ++++k+a + ke rakarararert +km +k Sopen03g009480.1 457 -LERNPKRA--KEVTLKELRAKARARARERTIKKMWTK 491 .33333333..368899****************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07727	1.8E-46	187	306	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase
PROSITE profile	PS51369	28.596	376	435	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.9E-27	381	444	IPR005333	Transcription factor, TCP
PROSITE profile	PS51370	10.57	470	487	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MAVNESNETA VALSHSIEID HYHPLYLHSS DTSGKSKLRF VDGKHTRETF PSSLLDLWEK 60 CNDIVLSWII NSIRKELLSS VIYVTNASKV WNDLKERLRE CWDEFDAIMP FPGCNSSNAL 120 AATSSNPIGA FVHQSRSSQY SHPSALHFTP EQYNQILQMI RPNRETSVLL YLQDLFSRRV 180 KGIGKHVQGK SLIECNWVYK IKHKANGEVE RYKARLVAKW FNQKEGLNYT ETFSPIAKMV 240 IVRSVLALAV AKKWFIYQMD VHNEFLQGDL FEEVYMTIPQ GFASHQGTDK VCRLHKSLYG 300 LKQAPSSSSI HDNPLPHYIS SSFHTSSPFL GFNGNQILLH QYYQNQFSSH YYLAKNNEDY 360 CDNSLRSFPM KKKSKKRERS CSKILTAQGP RDRRIRLSIN MARKFFDLQE LLGFDKPSKT 420 IDWLFTHSEV ALEELTNWST HQTHRPKISG AINNKGLERN PKRAKEVTLK ELRAKARARA 480 RERTIKKMWT KIETSHKSAN FFGKKDISEM EQQFFKNKLQ ANKEIIEGSG VTKIKIMPSL 540 ILGFNPNPYA PIESGTYYGG SSLSQGFQKP WDSYHSSQV

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MAVNESNETA VALSHSIEID HYHPLYLHSS DTSGKSKLRF VDGKHTRETF PSSLLDLWEK  60
CNDIVLSWII NSIRKELLSS VIYVTNASKV WNDLKERLRE CWDEFDAIMP FPGCNSSNAL  120
AATSSNPIGA FVHQSRSSQY SHPSALHFTP EQYNQILQMI RPNRETSVLL YLQDLFSRRV  180
KGIGKHVQGK SLIECNWVYK IKHKANGEVE RYKARLVAKW FNQKEGLNYT ETFSPIAKMV  240
IVRSVLALAV AKKWFIYQMD VHNEFLQGDL FEEVYMTIPQ GFASHQGTDK VCRLHKSLYG  300
LKQAPSSSSI HDNPLPHYIS SSFHTSSPFL GFNGNQILLH QYYQNQFSSH YYLAKNNEDY  360
CDNSLRSFPM KKKSKKRERS CSKILTAQGP RDRRIRLSIN MARKFFDLQE LLGFDKPSKT  420
IDWLFTHSEV ALEELTNWST HQTHRPKISG AINNKGLERN PKRAKEVTLK ELRAKARARA  480
RERTIKKMWT KIETSHKSAN FFGKKDISEM EQQFFKNKLQ ANKEIIEGSG VTKIKIMPSL  540
ILGFNPNPYA PIESGTYYGG SSLSQGFQKP WDSYHSSQV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4333	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-18	TCP domain protein 12