PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g007470.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 1017aa MW: 115002 Da PI: 5.2199 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.1 | 2.4e-11 | 5 | 64 | 36 | 99 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + le ++g+ Wev++ ++++g+++l+kGW++F++ + ++ ++F+++ rs f vv ++++ Sopen03g007470.2 5 VFLEAPHGKAWEVEV--ENSQGQIWLAKGWSDFCDYYSISVKSLLTFTYNPRSHF--VVAIYDQ 64 67999**********..********************************988888..9999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.998 | 1 | 65 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-8 | 5 | 64 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.4E-11 | 5 | 65 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-11 | 5 | 64 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.12E-9 | 5 | 63 | No hit | No description |
SuperFamily | SSF56672 | 3.56E-16 | 470 | 547 | No hit | No description |
Gene3D | G3DSA:3.30.420.10 | 2.4E-5 | 673 | 723 | IPR012337 | Ribonuclease H-like domain |
SuperFamily | SSF53098 | 5.12E-6 | 675 | 718 | IPR012337 | Ribonuclease H-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1017 aa Download sequence Send to blast |
MFNPVFLEAP HGKAWEVEVE NSQGQIWLAK GWSDFCDYYS ISVKSLLTFT YNPRSHFVVA 60 IYDQSTTEIE YLIDQDIESD EEEEDILVAQ ANANVIDEDI LILQSNANVI EEDIPILQSN 120 ANVIEDEEED IPVNFPQTSA NVIEQHQRCA YHSNSVGHDT EECINLKHKI QDLIDQEVVS 180 LQPAAPNVNT NPLPNNGGGN VSMIENDDDW CGTIVITPII HDEVEKAVAS LSIKEKKEFV 240 ILKPAKVVAL VPSKTLIKPK FMIETAAAQG MTRSGRYYTP EETALGVNVR DFDEVQRDTL 300 GAVNLVIQLS PAEFNAQFQV LDIDTSYNLL LGRPFIHMAG VVPSTVHQMM KLVWKNEELV 360 IHGKGSHSGR QAPIIDEVSL VTDFYTVELV NTIGDDKVDD YEEESEEPEY VAEEFLQFKN 420 QHKLNLEETE AINLGDQECV KEVNISVHLN EAQRKGLIHL LIGYIDMFVW ELNPAKCSFG 480 VPADKLLGFI VNRRGIELDP SKIKAIQELP PPKTRKELMS FLGRLNYIGR FIAQSTVVCE 540 PIFRTRRFAL ISRYKEVFRV RKLSKRCNTQ QKEVDTPYGS QFLLSGEVLY RRTPDLGLLR 600 CVNVVEAVKL IEHIHAGVCG MQMNGLTLAR KIIRAGYFWM TMENNCCKFV QKCHKCQVHG 660 DLIRVPPHEH NAMSSQWPLV AWGMDVIGPI EPASSNGHRF ILVSIDYFTK WVEVASYKLL 720 VRRTSRGFIR VCGTALKAGF VAVAAPRKAE DDKRGLKSNF PDLGRPENRR YCFCIHCMNP 780 AHEPLKKNNA YRPRSHPQRE EKITPMDRGK NIQMELTGEE LQRKIKQITQ EIQEAKEEGL 840 RVNMATAMYK AATLTLDEDL ASQIKRKKDV EMETEDLQEK LDMLRLKVLK MGKIARVAAS 900 PGSSGTLKKK REEIAGVSYG REKTPEARHI PKVVLGLPKI PTKLANRKLV IPSTTKIEYP 960 IDQDIESDEQ EEDILVAQAN ANVIDKDILI LQFNANVIEE DIPVLQSNAN VIEDEDS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7499 | 5 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-10 | B3 family protein |