PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g007470.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 767aa    MW: 86519 Da    PI: 5.1754
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g007470.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.7e-115643699
                      EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      + le ++g+ Wev++  ++++g+++l+kGW++F++   + ++  ++F+++ rs f  vv ++++
  Sopen03g007470.1  5 VFLEAPHGKAWEVEV--ENSQGQIWLAKGWSDFCDYYSISVKSLLTFTYNPRSHF--VVAIYDQ 64
                      67999**********..********************************988888..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.998165IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-11565IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-11564IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-8564IPR003340B3 DNA binding domain
CDDcd100177.42E-9563No hitNo description
SuperFamilySSF566722.37E-16470547No hitNo description
Gene3DG3DSA:3.30.420.101.7E-5673722IPR012337Ribonuclease H-like domain
SuperFamilySSF530983.6E-6675718IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MFNPVFLEAP HGKAWEVEVE NSQGQIWLAK GWSDFCDYYS ISVKSLLTFT YNPRSHFVVA  60
IYDQSTTEIE YLIDQDIESD EEEEDILVAQ ANANVIDEDI LILQSNANVI EEDIPILQSN  120
ANVIEDEEED IPVNFPQTSA NVIEQHQRCA YHSNSVGHDT EECINLKHKI QDLIDQEVVS  180
LQPAAPNVNT NPLPNNGGGN VSMIENDDDW CGTIVITPII HDEVEKAVAS LSIKEKKEFV  240
ILKPAKVVAL VPSKTLIKPK FMIETAAAQG MTRSGRYYTP EETALGVNVR DFDEVQRDTL  300
GAVNLVIQLS PAEFNAQFQV LDIDTSYNLL LGRPFIHMAG VVPSTVHQMM KLVWKNEELV  360
IHGKGSHSGR QAPIIDEVSL VTDFYTVELV NTIGDDKVDD YEEESEEPEY VAEEFLQFKN  420
QHKLNLEETE AINLGDQECV KEVNISVHLN EAQRKGLIHL LIGYIDMFVW ELNPAKCSFG  480
VPADKLLGFI VNRRGIELDP SKIKAIQELP PPKTRKELMS FLGRLNYIGR FIAQSTVVCE  540
PIFRTRRFAL ISRYKEVFRV RKLSKRCNTQ QKEVDTPYGS QFLLSGEVLY RRTPDLGLLR  600
CVNVVEAVKL IEHIHAGVCG MQMNGLTLAR KIIRAGYFWM TMENNCCKFV QKCHKCQVHG  660
DLIRVPPHEH NAMSSQWPLV AWGMDVIGPI EPASSNGHRF ILVSIDYFTK WVEVASYKLL  720
VRRTSRGFIR VCGTALKAGF VAVAAPRKGK NGFSIMKHSA IAIDFFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-10B3 family protein