PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g006930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 212aa MW: 24850.5 Da PI: 11.126 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5.1e-18 | 54 | 107 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ F + ++ +++++LA++lgL+ +qV+vWFqN+Ra++k+ Sopen03g006930.1 54 KRKLSQEQVNLLEQSFGDAHRLDMKTKAKLASELGLDLQQVTVWFQNKRARWKN 107 4589************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 99.3 | 3.5e-32 | 53 | 137 | 2 | 86 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kr+ls+eqv+lLE+sF ++L+ + K++la+eLgl+ +qv vWFqn+RAR+k+k+lE++y++Lk++++ e++rLe++ + Sopen03g006930.1 53 RKRKLSQEQVNLLEQSFGDAHRLDMKTKAKLASELGLDLQQVTVWFQNKRARWKNKKLENEYSKLKSQHEITIVEKCRLETQIQW 137 8*******************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.597 | 48 | 108 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-15 | 51 | 112 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.55E-16 | 53 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.14E-12 | 53 | 109 | No hit | No description |
Pfam | PF00046 | 3.7E-15 | 54 | 107 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-19 | 55 | 115 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.7E-5 | 79 | 88 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 83 | 106 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.7E-5 | 88 | 104 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MTHHQLDDHQ MVMISQYHSG INTQLAQGHQ GEVKPSRRRK KNKGETSNNG VVRKRKLSQE 60 QVNLLEQSFG DAHRLDMKTK AKLASELGLD LQQVTVWFQN KRARWKNKKL ENEYSKLKSQ 120 HEITIVEKCR LETQIQWIGL ALRANRLHRQ GLDRRPQKKL AFLTSESGSP KKWFVVAHKN 180 RRNEGYARFG ARLTFKMDRT GREGYYTKQL MA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 54 | RRRKKNKGETSNNGVVRKR |
2 | 38 | 55 | RKKNKGETSNNGVVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-175 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027771769.1 | 1e-94 | homeobox-leucine zipper protein ATHB-21-like | ||||
Swissprot | O23208 | 4e-46 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | Q9ZU70 | 4e-46 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A3Q7FG29 | 9e-88 | A0A3Q7FG29_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g034150.1.1 | 2e-88 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 2e-48 | homeobox protein 40 |
Publications ? help Back to Top | |||
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