PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g006910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 224aa MW: 26874.5 Da PI: 6.6974 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.8 | 2.4e-20 | 61 | 116 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR +++eq++ Le+ F ++++ e++++LA++lgL+ qV vWFqNrRa++k+ Sopen03g006910.1 61 RKRKLLSEEQVNLLERSFGDQHKLEMERKAKLASELGLDPHQVAVWFQNRRARWKN 116 89****************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 108.6 | 4.5e-35 | 62 | 152 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k++ ls+eqv+lLE+sF ++kLe erK++la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk++++ e+ rLe+ev +++e+l Sopen03g006910.1 62 KRKLLSEEQVNLLERSFGDQHKLEMERKAKLASELGLDPHQVAVWFQNRRARWKNKKLEEEYSKLKTQHEDTIIEKYRLETEVLKMKEQLC 152 66778**********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.443 | 57 | 117 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-19 | 59 | 121 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.61E-18 | 59 | 119 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-17 | 61 | 116 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-21 | 61 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.36E-15 | 61 | 118 | No hit | No description |
PRINTS | PR00031 | 5.9E-6 | 88 | 97 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.9E-6 | 97 | 113 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEKGLNMKGN KVDDQMELIS YFYPQIYSQL AQQQEETVKP RRRRRKNKVE GRDNTSEVVM 60 RKRKLLSEEQ VNLLERSFGD QHKLEMERKA KLASELGLDP HQVAVWFQNR RARWKNKKLE 120 EEYSKLKTQH EDTIIEKYRL ETEVLKMKEQ LCEAKKKIER LLLEHKSDIS SNNSPTSSIF 180 SMEQSHFNLG EFGMEEQLMD DNMFFVADYQ SNYVTLWDNE LEWI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 63 | RRKNKVEGRDNTSEVVMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069493.1 | 1e-165 | homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | Q9ZU70 | 1e-55 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | M1BIA9 | 1e-136 | M1BIA9_SOLTU; Uncharacterized protein | ||||
STRING | Solyc03g034130.2.1 | 1e-153 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-51 | homeobox protein 40 |
Publications ? help Back to Top | |||
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