PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g006890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 214aa MW: 25489 Da PI: 8.4163 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.3 | 1.7e-20 | 55 | 110 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR +++eq++ Le+ F ++++ +e++++LA++lgL+ qV vWFqNrRa++k+ Sopen03g006890.1 55 RKRNLLSEEQVNLLERSFGDQHKLETERKAKLASELGLDPHQVAVWFQNRRARWKN 110 89****************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 110.4 | 1.3e-35 | 56 | 146 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k+ ls+eqv+lLE+sF ++kLe+erK++la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk++++ + e+ rLe+ev +++++l Sopen03g006890.1 56 KRNLLSEEQVNLLERSFGDQHKLETERKAKLASELGLDPHQVAVWFQNRRARWKNKKLEEEYSKLKTQHEDIIIEKYRLETEVLKMKDQLC 146 66679**********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.556 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-19 | 53 | 115 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.13E-18 | 54 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.13E-15 | 55 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 55 | 118 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.3E-17 | 55 | 110 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.5E-6 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.5E-6 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MKGNKVDDQM ELISHFYPQI YSQLAQQQEE TVKPRRRRKK NKVEGRDNTS EVVMRKRNLL 60 SEEQVNLLER SFGDQHKLET ERKAKLASEL GLDPHQVAVW FQNRRARWKN KKLEEEYSKL 120 KTQHEDIIIE KYRLETEVLK MKDQLCEAKK KIERLLLERK IDISSNNSPT SSLIFSMEQS 180 HFSLGEFGME GQLMDNNMLF IADYQSTYMT LWDD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069477.1 | 1e-158 | homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | Q9ZU70 | 2e-55 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | M1BIA9 | 1e-137 | M1BIA9_SOLTU; Uncharacterized protein | ||||
STRING | Solyc03g034110.2.1 | 1e-142 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-48 | homeobox protein 40 |
Publications ? help Back to Top | |||
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