PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g006470.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SRS

Protein Properties

Length: 323aa MW: 36564.8 Da PI: 6.9102

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g006470.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	186	1.4e-57	110	242	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 t+sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++++++ ++++skr++++ s t l+ Sopen03g006470.1 110 ITISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLASLQQQEKE--DNNKSKRQKDD--------SYTGLE---- 188 689**************************************************9766533..23333333332........222322.... PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s+P++v+s+avf++vr+ss++++e+++aYq+av+i+Gh+fkGiLydqG ++ Sopen03g006470.1 189 ----VANSFPSKVNSTAVFQRVRMSSIEENEDQIAYQAAVNINGHIFKGILYDQGDNH 242 ....2357*********************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.4E-59	111	241	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.7E-27	113	155	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-24	193	239	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MAQFFSLGGG GREATNSQEY HHHHHQETTN STHNWFLYKH HDQELSTYKG FELWQQQQQQ 60 QQQQSHHNEE EQNYQILRNP IINSFGLDIG PSHDHHHHHE TNMMMRSSTI TISCQDCGNQ 120 AKKDCQHMRC RTCCKSRGFQ CQTHVKSTWV PAAKRRERQQ QLASLQQQEK EDNNKSKRQK 180 DDSYTGLEVA NSFPSKVNST AVFQRVRMSS IEENEDQIAY QAAVNINGHI FKGILYDQGD 240 NHEYNYMNGG DHDSSSGGDP VPRQYNLNLT RTATSAANDA TVGGGGVASA VAAEGSSHFL 300 ETSLYSSINT FATGTQFFPP SRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC331911	0.0	KC331911.1 Solanum lycopersicum expression of terpenoids 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015068491.1	0.0	protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	3e-81	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	U5L363	0.0	U5L363_SOLLC; Expression of terpenoids 2
STRING	PGSC0003DMT400058059	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-53	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]