PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g006450.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 280aa    MW: 31542.5 Da    PI: 9.1401
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g006450.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.92.9e-18199233135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Sopen03g006450.1 199 CSHCGVHKTPQWRTGPMGAKTLCNACGVRFKSGRL 233
                       *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.9E-7814273IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.635193229IPR000679Zinc finger, GATA-type
SMARTSM004016.0E-17193247IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-14195256No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14197231IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.67E-14198255No hitNo description
PfamPF003203.4E-16199233IPR000679Zinc finger, GATA-type
PROSITE patternPS003440199224IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MNSLEKALKT SYFRPETAMK MTHNQSSVDD FFVDNLLDLS NGFAEDEIEQ LNEHPNGFNT  60
QNPCSVSPQK KMEDENGDFG CELSFPENGL DNLEWLSQFV EEDSHSGYSL IGKLPVKKNQ  120
SVTENPVQVN LCFTVPVQTK PRTKRRRIGG RVWSFTGSST SSASSSTITT TAESIVQFPA  180
PVIKRRKMKT EKPVQPRRCS HCGVHKTPQW RTGPMGAKTL CNACGVRFKS GRLLPEYRPA  240
CSPTFSSERH SNNHRKVLEM RQKKEERTGG DRFAPPVHSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143147KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069101.10.0GATA transcription factor 5-like
SwissprotQ9FH579e-53GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A3Q7G5650.0A0A3Q7G565_SOLLC; GATA transcription factor
STRINGSolyc03g033660.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.28e-52GATA transcription factor 5